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From: Tim Prince (n8tm_at_[hidden])
Date: 2009-11-13 09:46:28


nader haghighi wrote:
> Hi Dear
>
> I install lam/mpi 7.1.4 for using in amber10 software.When i run script
> in linux, it appears that:
>
>
> *[nader_at_localhost ~/oper]# ./mdscript
> sander.MPI: error while loading shared libraries: libvml.so: cannot open
> shared object file: No such file or directory
> sander.MPI: error while loading shared libraries: libvml.so: cannot open
> shared object file: No such file or directory
> sander.MPI: sander.MPI: error while loading shared libraries: libvml.so:
> cannot open shared object file: No such file or directory
> error while loading shared libraries: libvml.so: cannot open shared
> object file: No such file or directory
You must set up so that the session opened on each node has
LD_LIBRARY_PATH or ldconfig set up so that the shared libraries are
accessible on each node. As libvml is a proprietary library included in
Intel MKL, it looks as if your run script should source the appropriate
ifortvars/iccvars or mklvars script.