Hi Brian,
Thanks a lot for the help.
I got arround the problem by statically linking only those libraries
which are not available on all nodes. Did this by removing the .so
files in the library directory, so that only the .a files were left. I
wonder if the compiler provides options to selectively specify
libraries to be linked statically.
Sourangshu
On Jan 1, 2008 4:02 AM, Brian Barrett <brbarret_at_[hidden]> wrote:
>
> By default, LAM/MPI does a few things that are un-friendly to static
> linking, including using some pthreads calls, using dlopen, and playing some
> linker tricks. I'd recommend compiling LAM/MPI with the options:
>
> --without-threads --without-memory-manager
>
> You'll still likely get some warnings about dlopen() and gethostbyname(),
> but those are mostly harmless.
>
> Brian
>
> On Dec 27, 2007, at 12:34 PM, Sourangshu Bhattacharya wrote:
>
> Dear Everybody,
>
> I was trying to compile my program into a static binary with lam/mpi.
> The program compiles perfectly when compiled without the static
> switch. However, it gives the following errors when trying to compile
> with the -static switch.
>
> I have seen a similar query on this mailing list, but no satisfactory
> replies. Please let me know if someone has faced a similar problem and
> succeded in solving it.
>
> Thank you.
> Regards,
> Sourangshu
> -------------------------------------------------------
> [sourangshu_at_ramanujan parcode]$ make kernel
> mpicc -static -I
> /home/sourangshu/experiments/lib/gsl/gsl-install//include -I
> /home/sourangshu/experiments/lib/glpk/glpk-install//include -L
> /home/sourangshu/experiments/lib/gsl/gsl-install//lib -L
> /home/sourangshu/experiments/lib/glpk/glpk-install//lib -c -o main.o
> main.c
> mpicc -static -I
> /home/sourangshu/experiments/lib/gsl/gsl-install//include -I
> /home/sourangshu/experiments/lib/glpk/glpk-install//include -L
> /home/sourangshu/experiments/lib/gsl/gsl-install//lib -L
> /home/sourangshu/experiments/lib/glpk/glpk-install//lib -c -o
> fullstr.o fullstr.c
> mpicc -static -I
> /home/sourangshu/experiments/lib/gsl/gsl-install//include -I
> /home/sourangshu/experiments/lib/glpk/glpk-install//include -L
> /home/sourangshu/experiments/lib/gsl/gsl-install//lib -L
> /home/sourangshu/experiments/lib/glpk/glpk-install//lib -c -o substr.o
> substr.c
> mpicc -static -I
> /home/sourangshu/experiments/lib/gsl/gsl-install//include -I
> /home/sourangshu/experiments/lib/glpk/glpk-install//include -L
> /home/sourangshu/experiments/lib/gsl/gsl-install//lib -L
> /home/sourangshu/experiments/lib/glpk/glpk-install//lib -c -o
> substrlimitker.o substrlimitker.c
> mpicc -static -I
> /home/sourangshu/experiments/lib/gsl/gsl-install//include -I
> /home/sourangshu/experiments/lib/glpk/glpk-install//include -L
> /home/sourangshu/experiments/lib/gsl/gsl-install//lib -L
> /home/sourangshu/experiments/lib/glpk/glpk-install//lib -c -o eig.o
> eig.c
> mpicc -static -I
> /home/sourangshu/experiments/lib/gsl/gsl-install//include -I
> /home/sourangshu/experiments/lib/glpk/glpk-install//include -L
> /home/sourangshu/experiments/lib/gsl/gsl-install//lib -L
> /home/sourangshu/experiments/lib/glpk/glpk-install//lib -o kernel
> main.o fullstr.o substr.o substrlimitker.o eig.o \
> /home/sourangshu/experiments/lib/CLAPACK//tmglib_LINUX.a \
> /home/sourangshu/experiments/lib/CLAPACK//lapack_LINUX.a
> /home/sourangshu/experiments/lib/CLAPACK//blas_LINUX.a \
> /home/sourangshu/experiments/lib/CLAPACK//libF77.a
> /home/sourangshu/experiments/lib/CLAPACK//libI77.a \
> -lgsl -lgslcblas -lglpk -lm -lc
> /opt/lam/gnu/lib/liblam.a(ltdl.o)(.text+0x472): In function `sys_dl_open':
> : warning: Using 'dlopen' in statically linked applications requires
> at runtime the shared libraries from the glibc version used for
> linking
> /usr/lib/gcc/x86_64-redhat-linux/3.4.5/../../../../lib64/libpthread.a(lockfile.o)(.text+0x0):
> In function `flockfile':
> : multiple definition of `_IO_flockfile'
> /usr/lib/gcc/x86_64-redhat-linux/3.4.5/../../../../lib64/libc.a(flockfile.o)(.text+0x0):
> first defined here
> /usr/bin/ld: Warning: size of symbol `_IO_flockfile' changed from 24
> in
> /usr/lib/gcc/x86_64-redhat-linux/3.4.5/../../../../lib64/libc.a(flockfile.o)
> to 12 in
> /usr/lib/gcc/x86_64-redhat-linux/3.4.5/../../../../lib64/libpthread.a(lockfile.o)
> /usr/lib/gcc/x86_64-redhat-linux/3.4.5/../../../../lib64/libpthread.a(lockfile.o)(.text+0x0):
> In function `flockfile':
> : multiple definition of `__flockfile'
> /usr/lib/gcc/x86_64-redhat-linux/3.4.5/../../../../lib64/libc.a(flockfile.o)(.text+0x0):
> first defined here
> /usr/bin/ld: Warning: size of symbol `__flockfile' changed from 24 in
> /usr/lib/gcc/x86_64-redhat-linux/3.4.5/../../../../lib64/libc.a(flockfile.o)
> to 12 in
> /usr/lib/gcc/x86_64-redhat-linux/3.4.5/../../../../lib64/libpthread.a(lockfile.o)
> /usr/lib/gcc/x86_64-redhat-linux/3.4.5/../../../../lib64/libpthread.a(lockfile.o)(.text+0x10):
> In function `funlockfile':
> : multiple definition of `_IO_funlockfile'
> /usr/lib/gcc/x86_64-redhat-linux/3.4.5/../../../../lib64/libc.a(funlockfile.o)(.text+0x0):
> first defined here
> /usr/bin/ld: Warning: size of symbol `_IO_funlockfile' changed from 24
> in
> /usr/lib/gcc/x86_64-redhat-linux/3.4.5/../../../../lib64/libc.a(funlockfile.o)
> to 12 in
> /usr/lib/gcc/x86_64-redhat-linux/3.4.5/../../../../lib64/libpthread.a(lockfile.o)
> /usr/lib/gcc/x86_64-redhat-linux/3.4.5/../../../../lib64/libpthread.a(lockfile.o)(.text+0x10):
> In function `funlockfile':
> : multiple definition of `__funlockfile'
> /usr/lib/gcc/x86_64-redhat-linux/3.4.5/../../../../lib64/libc.a(funlockfile.o)(.text+0x0):
> first defined here
> /usr/bin/ld: Warning: size of symbol `__funlockfile' changed from 24
> in
> /usr/lib/gcc/x86_64-redhat-linux/3.4.5/../../../../lib64/libc.a(funlockfile.o)
> to 12 in
> /usr/lib/gcc/x86_64-redhat-linux/3.4.5/../../../../lib64/libpthread.a(lockfile.o)
> /opt/lam/gnu/lib/liblam.a(kill.o)(.text+0x595): In function
> `lam_tmpdir_init_opt':
> : warning: Using 'getpwuid' in statically linked applications requires
> at runtime the shared libraries from the glibc version used for
> linking
> /opt/lam/gnu/lib/liblam.a(lam_gethostby.o)(.text+0x11): In function
> `lam_gethostbyaddr':
> : warning: Using 'gethostbyaddr' in statically linked applications
> requires at runtime the shared libraries from the glibc version used
> for linking
> /opt/lam/gnu/lib/liblam.a(lam_gethostby.o)(.text+0x1): In function
> `lam_gethostbyname':
> : warning: Using 'gethostbyname' in statically linked applications
> requires at runtime the shared libraries from the glibc version used
> for linking
> collect2: ld returned 1 exit status
> mpicc: No such file or directory
> make: *** [kernel] Error 1
>
>
> --
> "I have never taken any exercise except sleeping and resting." - Mark Twain
>
> Sourangshu Bhattacharya
> PhD Student,
> Dept. of Computer Science & Automation,
> Indian Institute of Science,
> Bangalore, India.
>
> http://people.csa.iisc.ernet.in/sourangshu
> _______________________________________________
> This list is archived at http://www.lam-mpi.org/MailArchives/lam/
>
>
>
> --
> Brian Barrett
> LAM/MPI Developer
> Make today a LAM/MPI day!
>
>
> _______________________________________________
> This list is archived at http://www.lam-mpi.org/MailArchives/lam/
>
--
"I have never taken any exercise except sleeping and resting." - Mark Twain
Sourangshu Bhattacharya
PhD Student,
Dept. of Computer Science & Automation,
Indian Institute of Science,
Bangalore, India.
http://people.csa.iisc.ernet.in/sourangshu
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