As you indicated in your followup mail, this is likely caused by finding
the "wrong" libmpi.
I would generally recommend using the mpicc / mpif77 wrapper compilers
when compiling applications such as HPL. It allows you to avoid
specifying all the -I's, -L's, and -l's that LAM requires. You can
clear out all those lines in the Makefile if you just use mpif77 and
mpicc. This will also get the "right" libmpi and avoid these linker
problems.
> -----Original Message-----
> From: lam-bounces_at_[hidden]
> [mailto:lam-bounces_at_[hidden]] On Behalf Of Gavin Tran
> Sent: Friday, May 12, 2006 4:48 AM
> To: General LAM/MPI mailing list
> Subject: LAM: Problems in running Linpack HPL benchmark with LAM
>
> Hi,
>
> I'm preparing to run a Linpack HPL benchmark on my clusters with
> LAM/MPI 7.1.1 successfully installed.
>
> I set params in Make.Linux_P4SSE_CBLAS for example. I changed its
> default value from MPICH settings to LAM/MPI ,and also with the path
> to ATLAS library.
>
> When i run make arch=Linux_P4SSE_CBLAS , it poured out a
> series of errors below
> ----------------------------
> home/jishin/research/benchmark/linpack-hpl/hpl/include/hpl_mis
> c.h:54:1:
> warning: this is the location of the previous definition
> /usr/bin/gcc -o HPL_pdtest.o -c -DHPL_CALL_CBLAS
> -I/home/jishin/research/benchmark/linpack-hpl/hpl/include
> -I/home/jishin/research/benchmark/linpack-hpl/hpl/include/Linu
> x_P4SSE_CBLAS
> -I/usr/lib/lam/include -fomit-frame-pointer -O3 -funroll-loops
> ../HPL_pdtest.c
> In file included from /usr/lib/lam/include/mpi.h:23,
> from
> /home/jishin/research/benchmark/linpack-hpl/hpl/include/hpl_pm
> isc.h:54,
> from
> /home/jishin/research/benchmark/linpack-hpl/hpl/include/hpl.h:80,
> from ../HPL_pdtest.c:50:
> /usr/lib/lam/include/lam_config.h:591:1: warning:
> "STDC_HEADERS" redefined
> ----------------------------
> usr/lib/lam/lib/libmpi.a(finalize.o)(.text+0x18): In function
> `MPI_Finalize':
> : undefined reference to `lam_mpi_thread_level'
> /usr/lib/lam/lib/libmpi.a(finalize.o)(.text+0x2a): In
> function `MPI_Finalize':
> : undefined reference to `lam_mpi_main_thread'
> /usr/lib/lam/lib/libmpi.a(finalize.o)(.text+0x15f): In
> function `MPI_Finalize':
> : undefined reference to `lam_mpi_thread_level'
> /usr/lib/lam/lib/libmpi.a(finalize.o)(.text+0x168): In
> function `MPI_Finalize':
> : undefined reference to `lam_mpi_thread_finalize'
> /usr/lib/lam/lib/libmpi.a(lammpiinit.o)(.text+0x1f4): In function
> `lam_mpi_init':
> : undefined reference to `lam_mpi_thread_level'
> /usr/lib/lam/lib/libmpi.a(lammpiinit.o)(.text+0x1fe): In function
> `lam_mpi_init':
> : undefined reference to `lam_mpi_thread_init'
> /usr/lib/lam/lib/libmpi.a(lamthreads.o)(.text+0x21): In function
> `lam_thread_create':
> : undefined reference to `pthread_create'
> /usr/lib/lam/lib/libmpi.a(lamthreads.o)(.text+0x55): In function
> `lam_thread_join':
> : undefined reference to `pthread_join'
> /usr/lib/lam/lib/libmpi.a(lamupdown.o)(.text+0x248): In function
> `lam_updown_reset_thr_level':
> : undefined reference to `lam_mpi_thread_level'
> /usr/lib/lam/lib/libmpi.a(lamupdown.o)(.text+0x258): In function
> `lam_updown_reset_thr_level':
> : undefined reference to `lam_mpi_mutex'
> /usr/lib/lam/lib/libmpi.a(lamupdown.o)(.text+0x2b6): In
> function `lam_setfunc':
> : undefined reference to `lam_mpi_thread_level'
> ----------------------------------
>
> There're a lot of similar errors.
>
> By the way, I run my system on Debian Sarge. With ATLAS library
> installed from apt-get , not from source.
>
> Any ideas about that.
>
> Thank in advance.
>
> P.S : I attached make.log and my Make.Linux* file.
> --
> Gavin Tran
>
> -----BEGIN PGP SIGNATURE-----
> Version: GnuPG v1.4.1 (GNU/Linux)
>
> iD8DBQFDtPezQipgvQyG5e4RAv4WAJ0bpEAHemKWf+yaJ23JwETylJct/wCdHQC6
> 8HsnvA0JLJedWHkFUFKFj1A=
> =FSoP
> -----END PGP SIGNATURE-----
>
|
