I.ve tried to install Rmpi using lam-mpi in a ibm cluster.
I installed R without readline (suse has installed readline4)
./configure –with-readline=no
In the master server x86_64 Ive installed lam-7.1.2
Using
./configure --enable-shared --disable-static
(seems work well)
Becuase Rmpi a compilation problem
Finally Rmpi
/usr/local/lib64/R/bin/R CMD INSTALL
Rmpi_0.5-2.tar.gz--configure-args=--with-mpi=/usr/local/
(it finally compille well)
But when I tryed to load de Rmpi library in R, it doesn't work
With this error:
> library(Rmpi)
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library
'/usr/local/lib64/R/library/Rmpi/libs/Rmpi.so':
/usr/local/lib/liblam.so.0: undefined symbol: openpty
Error in library(Rmpi) : .First.lib failed for 'Rmpi'
Error in dyn.unload(x) : dynamic/shared library
'/usr/local/lib64/R/library/Rmpi/libs/Rmpi.so' was not loaded
>
May give me some advise
EMILIANO
--
--------------------------------------------------------
Emiliano Barreto_Hernandez
Profesor Asociado
Colombia EMBnet Node Manager
Centro de Bioinformática
Instituto de Biotecnología - Universidad Nacional de Colombia
Edificio Manuel Ancizar
Bogotá - Colombia
Tel +57 3165000 ext 16956 Fax +571 3165415
ebarretoh_at_[hidden]
http://bioinf.ibun.unal.edu.co
http://www.co.embnet.org
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