I,ve finally installed Rmpi, fisrt recompiling LAM-MPI
using --enable-shared --disable-static and after that
with
R CMD INSTALL Rmpi_0.5-2.tar.gz --configure-args=--with-mpi=/usr/local/
but now i have a new problem, when
lamboot -v
I had
-1<20037> ssi:boot:base:linear: Failed to boot n1 (10.1.1.60)
n-1<20037> ssi:boot:base:linear: aborted!
n-1<20043> ssi:boot:base:linear: booting n0 ( 10.1.1.100)
n-1<20043> ssi:boot:base:linear: booting n1 (10.1.1.60)
ERROR: LAM/MPI unexpectedly received the following on stderr:
tkill: error while loading shared libraries: liblam.so.0: cannot open shared
object file: No such file or directory
Before shared optyion LAM and rsh work well,
Any idea?
Emiliano
-------------------------------------------------------
Emiliano Barreto_Hernandez
Profesor Asociado
Colombia EMBnet Node Manager
Centro de Bioinformática
Instituto de Biotecnología - Universidad Nacional de Colombia
Edificio Manuel Ancizar
Bogotá - Colombia
Tel +57 3165000 ext 16956 Fax +571 3165415
ebarretoh_at_[hidden]
http://bioinf.ibun.unal.edu.co
http://www.co.embnet.org
---------- Forwarded message ----------
From: Emiliano Barreto_Hernandez <ebarretoh_at_[hidden]>
Date: May 9, 2006 12:44 PM
Subject: compilation problem
To: lam_at_[hidden]
Ive tryed to install Rmpi that is an implemetation of mpi in R that use
lam-mpi.
I used the next command:
R CMD INSTALL Rmpi_0.5-2.tar.gz
But occurred this error:
gcc -shared -L/usr/local/lib64 -o Rmpi.so conversion.o internal.o RegQuery.o
Rmpi.o -lmpi -llam -lutil -lpthread -L/usr/local/lib64/R/lib -lR
/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin
/ld: /usr/local/lib/libmpi.a( infoset.o): relocation R_X86_64_32 can not be
used when making a shared object; recompile with -fPIC
/usr/local/lib/libmpi.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
make: *** [Rmpi.so ] Error 1
chmod: cannot access `/usr/local/lib64/R/library/Rmpi/libs/*': No such file
or directory
ERROR: compilation failed for package 'Rmpi'
** Removing '/usr/local/lib64/R/library/Rmpi'
It looks like I must recompile lim with -fPIC but I coudn't. May you give me
some advice
Best
EBH
--
--------------------------------------------------------
Emiliano Barreto_Hernandez
Profesor Asociado
Colombia EMBnet Node Manager
Centro de Bioinformática
Instituto de Biotecnología - Universidad Nacional de Colombia
Edificio Manuel Ancizar
Bogotá - Colombia
Tel +57 3165000 ext 16956 Fax +571 3165415
ebarretoh_at_[hidden]
http://bioinf.ibun.unal.edu.co
http://www.co.embnet.org
--
-
--
--------------------------------------------------------
Emiliano Barreto_Hernandez
Profesor Asociado
Colombia EMBnet Node Manager
Centro de Bioinformática
Instituto de Biotecnología - Universidad Nacional de Colombia
Edificio Manuel Ancizar
Bogotá - Colombia
Tel +57 3165000 ext 16956 Fax +571 3165415
ebarretoh_at_[hidden]
http://bioinf.ibun.unal.edu.co
http://www.co.embnet.org
|
