No go. I added the to ld.so.conf & ran ldconfig. I still get the same
undefined reference and the compile halts.
-paul
Robert LeBlanc wrote:
> Have you tried to add the lib paths to /etc/ld.so.conf and then running
> ldconfig?
>
> /opt/intel/cc/9.0/lib
> /opt/intel/fc/9.0/lib
>
> In fact, I don't think you need the pthread flag in any case, LAM will still
> compile pthreads into MPI applications without this flag. LAM is so small
> that you will probably increase runtime by even having pthreads in there.
>
> Robert LeBlanc
> BioAg Computer Support
> Brigham Young University
>
>
>>-----Original Message-----
>>From: lam-bounces_at_[hidden] [mailto:lam-bounces_at_[hidden]] On Behalf
>>Of Paul Van Allsburg
>>Sent: Tuesday, March 21, 2006 11:25 AM
>>To: General LAM/MPI mailing list
>>Subject: Re: LAM: Build LAM 7.1.2 with Intel mpicc.cc undef ref
>>
>>Still no success. I tried the export of PATH and the flags, I still get
>>the same undefined reference to `__gthrw_pthread_once(int*, void (*)())'.
>>-paul
>>
>>
>>Robert LeBlanc wrote:
>>
>>>I think you may need to export the bin dirs to your path and possibly
>>
>>add
>>
>>>the libs to /etc/ldconfig.cfg. Not sure, this is what I have in my
>>>documentation from the last time I compiled it.
>>>
>>>export CC=icc
>>>export CXX=icpc
>>>export FC=ifort
>>>export PATH=/opt/intel_cc_80/bin:/opt/intel_fc_80/bin:$PATH
>>>export CFLAGS='-O3 -tpp7 -cpu=pentium4 -xN'
>>>export CXXFLAGS='-O3 -tpp7 -cpu=pentium4 -xN'
>>>export FFLAGS='-O3 -tpp7 -cpu=pentium4 -xN'
>>>
>>>run in the base of the tar ball:
>>>
>>>./configure -prefix=/usr/local/lam/intel_80
>>>make
>>>make install (as root)
>>>
>>>Robert LeBlanc
>>>BioAg Computer Support
>>>Brigham Young University
>>>
>>>
>>>
>>>>-----Original Message-----
>>>>From: lam-bounces_at_[hidden] [mailto:lam-bounces_at_[hidden]] On Behalf
>>>>Of Paul Van Allsburg
>>>>Sent: Tuesday, March 21, 2006 9:55 AM
>>>>To: lam_at_[hidden]
>>>>Subject: LAM: Build LAM 7.1.2 with Intel mpicc.cc undef ref
>>>>
>>>>I have Intel C & Fortran v9 compilers & Cluster toolkit,
>>>>running on fedora core 4, my build fails at "Making all in wrappers"
>>>>
>>>>export CC=/opt/intel/cc/9.0/bin/icc
>>>>export CXX=/opt/intel/cc/9.0/bin/icpc
>>>>export FC=/opt/intel/fc/9.0/bin/ifort
>>>>./configure --prefix=/usr/local/lam/lam-7.1.2_intel --without-exflags
>>>>--with-boot-tm=/var/spool/PBS
>>>>make all
>>>>
>>>>-error generated at:
>>>>
>>>>/opt/intel/cc/9.0/bin/icpc -O3 -pthread -o mpicc mpicc.o wrap_cc.o
>>>>wrap_engine_cc.o ../../share/liblam/.libs/liblam.a -ldl -lutil
>>>>mpicc.o(.text+0xca7): In function `main':
>>>>mpicc.cc: undefined reference to `__gthrw_pthread_once(int*, void
>>
>>(*)())'
>>
>>>>mpicc.o(.gnu.linkonce.t._ZNSt6vectorISsSaISsEE9push_backERKSs[.gnu.linko
>>
>>nc
>>
>>>>e.t._ZNSt6vectorISsSaISsEE9push_backERKSs]+0x88f):
>>>>In function `std::vector<std::string, std::allocator<std::string>
>>>>
>>>>>::push_back(std::string const&)':
>>>>
>>>>mpicc.cc: undefined reference to `__gthrw_pthread_once(int*, void
>>
>>(*)())'
>>
>>>>I've also tried the ./configure without the --without-exflags option but
>>>>with the same results. Where did I go wrong?
>>>>
>>>>Thanks,
>>>>Paul
>>>>
>>>>
>>>>--
>>>>Paul Van Allsburg
>>>>Hope College
>>>>Holland, Michigan
|
