The problem is solved.
It seems that not only the binaries have to be on the different nodes,
but also the inputfile you want to analyse.
With the small file that I tested, it was in my home directory on all
nodes, because I tested the different nodes seperately with that file.
When I tried a larger file, it gave first an errormessage, and when I
renamed the big file the same way as the small file, it started because
there was a file with the same name on the other node, but it hang
halfway reading the sequences because the files contained other
inputsequences...
Andy
Robert LeBlanc wrote:
> I would say Mr. Bayes (on file). It is not recommened to mix versions
> of LAM so if they differ, I would work to get both machines the same.
> Download the source, config, make and make install.
>
>
>
> Robert LeBlanc
>
> BioAg Computer Support
>
> Brigham Young University
>
>
>
> ------------------------------------------------------------------------
>
> From: Andy Vierstraete [mailto:andy.vierstraete_at_[hidden]]
> Sent: Wednesday, December 14, 2005 9:46 AM
> To: Robert LeBlanc
> Subject: Re: LAM: LAM and MrBayes hangs on larger file
>
>
>
> Do you mean copying the binaries from MrBayes, or from Lam, of both ?
>
> Robert LeBlanc wrote:
>
> I could be possible that would be a problem. You are running the same
> version of LAM on both computers right? I would try copying the binary
> from one machine to the other and giving that a try. My Mr Bayes is
> complied with gcc 4.0.2 and I think I compiled LAM with 3.3.
>
>
>
> Robert LeBlanc
>
> BioAg Computer Support
>
> Brigham Young University
>
>
>
> ------------------------------------------------------------------------
>
> From: Andy Vierstraete [mailto:andy.vierstraete_at_[hidden]]
> Sent: Wednesday, December 14, 2005 1:44 AM
> To: Robert LeBlanc
> Subject: Re: LAM: LAM and MrBayes hangs on larger file
>
>
>
> on Suse 8.2 it is gcc 3.3-23 and on Suse 10 it is gcc 4.0.2. Can this
> cause the problems ?
>
> Andy
>
> Robert LeBlanc wrote:
>
>Andy,
>
> Both our production and test cluster are full so I was not able to
>
>test it on different nodes. I did run in on my workstation using three
>
>processors and it ran just fine. I used the same LAM and Mr. Bayes
>
>version. They only other thing may be a compiler issue. Did you use gcc?
>
>What version?
>
>
>
>Robert LeBlanc
>
>BioAg Computer Support
>
>Brigham Young University
>
>
>
>leblanc_at_bruce:~/Desktop/test$ lamboot
>
>
>
>LAM 7.1.1/MPI 2 C++/ROMIO - Indiana University
>
>
>
>leblanc_at_bruce:~/Desktop/test$ mpirun -np 3 ./mrbayes-3.1.1/mb 169b.pau
>
> MrBayes v3.1.1
>
>
>
> (Bayesian Analysis of Phylogeny)
>
>
>
> (Parallel version)
>
> (3 processors available)
>
>
>
> by
>
>
>
> John P. Huelsenbeck and Fredrik Ronquist
>
>
>
> Section of Ecology, Behavior and Evolution
>
> Division of Biological Sciences
>
> University of California, San Diego
>
> johnh_at_[hidden] <mailto:johnh_at_[hidden]>
>
>
>
> School of Computational Science
>
> Florida State University
>
> ronquist_at_[hidden] <mailto:ronquist_at_[hidden]>
>
>
>
> Distributed under the GNU General Public License
>
>
>
> Type "help" or "help <command>" for information
>
> on the commands that are available.
>
>
>
>
>
>
>
> Executing file "169b.pau"
>
> DOS line termination
>
> Longest line length = 123
>
> Parsing file
>
> Expecting NEXUS formatted file
>
> Reading data block
>
> Allocated matrix
>
> Matrix has 175 taxa and 244 characters
>
> Data matrix is interleaved
>
> Data is Protein
>
> Missing data coded as N
>
> Gaps coded as -
>
> Setting default partition (does not divide up characters).
>
> Taxon 1 -> ArabidopsisNsHb1
>
> Taxon 2 -> EuryaleNsHb
>
> Taxon 3 -> MarchantiaNsHb
>
> Taxon 4 -> TremaNsHb
>
> Taxon 5 -> OryzaNsHb1
>
> Taxon 6 -> PhyscomitrellaNsHb
>
> Taxon 7 -> CanavaliaSHb
>
> Taxon 8 -> LupinSHb
>
> Taxon 9 -> SesbaniaSHb
>
> Taxon 10 -> CasuarinaSHb
>
> Taxon 11 -> AgrtumGCS
>
> Taxon 12 -> BacsubGCS
>
> Taxon 13 -> Chrvio1GCS
>
> Taxon 14 -> EsccolGCS
>
> Taxon 15 -> GeosulGCS
>
> Taxon 16 -> HalmarGCS
>
> Taxon 17 -> SinmelGCS
>
> Taxon 18 -> VibvulGCS
>
> Taxon 19 -> AerperPgb
>
> Taxon 20 -> MetacePgb
>
> Taxon 21 -> Halmar
>
> Taxon 22 -> Mycavi1
>
> Taxon 23 -> Myxxan1
>
> Taxon 24 -> Nospun2
>
> Taxon 25 -> Solusi1
>
> Taxon 26 -> Syncys
>
> Taxon 27 -> Xanaxo
>
> Taxon 28 -> Agrtum1
>
> Taxon 29 -> Borper1
>
> Taxon 30 -> Burcep1
>
> Taxon 31 -> Chlaur
>
> Taxon 32 -> Deirad
>
> Taxon 33 -> Exiguo
>
> Taxon 34 -> Kinrad
>
> Taxon 35 -> Lepint
>
> Taxon 36 -> Mycavi2
>
> Taxon 37 -> Staaur
>
> Taxon 38 -> Acifer3
>
> Taxon 39 -> Bdebac2
>
> Taxon 40 -> Borper2
>
> Taxon 41 -> Camjej
>
> Taxon 42 -> Mycavi3
>
> Taxon 43 -> Novaro
>
> Taxon 44 -> CyanmerSDgb
>
> Taxon 45 -> Thapse1SDgb
>
> Taxon 46 -> Chocri1FHb
>
> Taxon 47 -> Chocri22x2Hb
>
> Taxon 48 -> Thapse22x2Hb
>
> Taxon 49 -> Chlrei12x2Hb
>
> Taxon 50 -> Paramecium
>
> Taxon 51 -> Arabidopsis
>
> Taxon 52 -> Oryza
>
> Taxon 53 -> BacantF
>
> Taxon 54 -> DeiradF
>
> Taxon 55 -> EsccolF
>
> Taxon 56 -> ExiguoF
>
> Taxon 57 -> MagmagF
>
> Taxon 58 -> MyctubF
>
> Taxon 59 -> OceiheF
>
> Taxon 60 -> RhodopirellF
>
> Taxon 61 -> PseaerF
>
> Taxon 62 -> RalmetF
>
> Taxon 63 -> StaaurF
>
> Taxon 64 -> Strave1F
>
> Taxon 65 -> VibchoF
>
> Taxon 66 -> Aquaeox
>
> Taxon 67 -> Brajap1x
>
> Taxon 68 -> Camjejx
>
> Taxon 69 -> Chrvio2x
>
> Taxon 70 -> Deshafx
>
> Taxon 71 -> Gloviox
>
> Taxon 72 -> Rhobalx
>
> Taxon 73 -> Vitstex
>
> Taxon 74 -> Pseaerx
>
> Taxon 75 -> Thefusx
>
> Taxon 76 -> Aspnid1
>
> Taxon 77 -> Debhan1
>
> Taxon 78 -> Dicdis1
>
> Taxon 79 -> Gialam
>
> Taxon 80 -> Neucra1
>
> Taxon 81 -> Saccer1
>
> Taxon 82 -> Schpom1
>
> Taxon 83 -> HomoNgb
>
> Taxon 84 -> GallusNgb
>
> Taxon 85 -> DanioNgb
>
> Taxon 86 -> HomoCygb
>
> Taxon 87 -> GallusCygb
>
> Taxon 88 -> DanioCygb1
>
> Taxon 89 -> HomoA
>
> Taxon 90 -> SqualusA
>
> Taxon 91 -> AnserA
>
> Taxon 92 -> HomoB
>
> Taxon 93 -> AnserB
>
> Taxon 94 -> SqualusB
>
> Taxon 95 -> HomoMb
>
> Taxon 96 -> ThunnusMb
>
> Taxon 97 -> GallusMb
>
> Taxon 98 -> GalgalEyegb
>
> Taxon 99 -> TetnigHbX
>
> Taxon 100 -> XentroHbX
>
> Taxon 101 -> PetmatHb2
>
> Taxon 102 -> MyxgluHb3
>
> Taxon 103 -> Cioint1
>
> Taxon 104 -> CauareHbC
>
> Taxon 105 -> Lumterb
>
> Taxon 106 -> Lumterc
>
> Taxon 107 -> MacdecB
>
> Taxon 108 -> MacdecC
>
> Taxon 109 -> Tylhet2B
>
> Taxon 110 -> Tylhet2A
>
> Taxon 111 -> Alvpom
>
> Taxon 112 -> AmpornDHP
>
> Taxon 113 -> AremarMb
>
> Taxon 114 -> GlydibP1
>
> Taxon 115 -> GlydibM4
>
> Taxon 116 -> AphacuNgb
>
> Taxon 117 -> Anogam
>
> Taxon 118 -> Dromel
>
> Taxon 119 -> Gasint
>
> Taxon 120 -> ChithuCTT9
>
> Taxon 121 -> TokakaHb5
>
> Taxon 122 -> AplysiaMb
>
> Taxon 123 -> BarlimD1
>
> Taxon 124 -> BioglaMb
>
> Taxon 125 -> BioglaD1
>
> Taxon 126 -> CalnauHb3
>
> Taxon 127 -> CalsoyHb1
>
> Taxon 128 -> LucpecHb1
>
> Taxon 129 -> NasmutMb
>
> Taxon 130 -> ArtsalD1
>
> Taxon 131 -> ArtsalD9
>
> Taxon 132 -> DaphmagD1
>
> Taxon 133 -> DaphmagD2
>
> Taxon 134 -> CerelactNgb
>
> Taxon 135 -> Clonsin
>
> Taxon 136 -> Parepi
>
> Taxon 137 -> AscsuuD1
>
> Taxon 138 -> AscsuuMb
>
> Taxon 139 -> Mernigeyegb
>
> Taxon 140 -> Syntra
>
> Taxon 141 -> Toxcan
>
> Taxon 142 -> Acinetx
>
> Taxon 143 -> ZK637.13
>
> Taxon 144 -> F49E2.4
>
> Taxon 145 -> C52A11.2
>
> Taxon 146 -> C28F5.2
>
> Taxon 147 -> W01C9.5
>
> Taxon 148 -> C29F5.7
>
> Taxon 149 -> F19H6.2
>
> Taxon 150 -> R01E6.6
>
> Taxon 151 -> F46C8.7
>
> Taxon 152 -> R13A1.8
>
> Taxon 153 -> C06H2.5
>
> Taxon 154 -> C26C6.7
>
> Taxon 155 -> F52A8.4
>
> Taxon 156 -> T22C1.2
>
> Taxon 157 -> C18C4.1
>
> Taxon 158 -> R11H6.3
>
> Taxon 159 -> C23H5.2
>
> Taxon 160 -> T06A1.3
>
> Taxon 161 -> Y17G7B.6
>
> Taxon 162 -> Y57G7A.9
>
> Taxon 163 -> Y15E3A.2
>
> Taxon 164 -> Y58A7A.6
>
> Taxon 165 -> C18C4.9
>
> Taxon 166 -> R90.5
>
> Taxon 167 -> C36E8.2
>
> Taxon 168 -> Y75B7AL.1
>
> Taxon 169 -> F35B12.8
>
> Taxon 170 -> F21A3.6
>
> Taxon 171 -> C06E4.7
>
> Taxon 172 -> F56C4.3
>
> Taxon 173 -> R102.9
>
> Taxon 174 -> C09H10.8
>
> Taxon 175 -> Y22D7AR.5
>
> Setting output file names to "169b.pau.<run<i>.p/run<i>.t>"
>
> Successfully read matrix
>
> Exiting data block
>
> Reading MrBayes block
>
> Setting Rates to Gamma
>
> Successfully set likelihood model parameters
>
> Setting Aamodelpr to Fixed(Jones)
>
> Successfully set prior model parameters
>
> Setting number of generations to 2000000
>
> Setting print frequency to 1000
>
> Setting sample frequency to 100
>
> Setting number of chains to 4
>
> Setting program to save branch length information
>
> Running Markov chain
>
> MCMC stamp = 9680498216
>
> Seed = 1134497210
>
> Swapseed = 1134497210
>
> Model settings:
>
>
>
> Datatype = Protein
>
> Aamodel = Jones
>
> Covarion = No
>
> # States = 20
>
> State frequencies are fixed to the Jones
>
>frequencies
>
> Rates = Gamma
>
> Gamma shape parameter is uniformly dist-
>
> ributed on the interval (0.05,50.00).
>
> Gamma distribution is approximated using 4
>
>categories.
>
>
>
> Active parameters:
>
>
>
> Parameters
>
> ------------------
>
> Statefreq 1
>
> Shape 2
>
> Topology 3
>
> Brlens 4
>
> ------------------
>
>
>
> 1 -- Parameter = Statefreq
>
> Prior = Fixed (Jones frequencies)
>
> 2 -- Parameter = Shape
>
> Prior = Uniform(0.05,50.00)
>
> 3 -- Parameter = Topology
>
> Prior = All topologies equally probable a priori
>
> 4 -- Parameter = Brlens
>
> Prior = Branch lengths are
>
>Unconstrained:Exponential(10.0)
>
>
>
> Number of chains on processor 1 = 3
>
> Number of chains on processor 2 = 3
>
> Number of chains on processor 3 = 2
>
> Number of taxa = 175
>
> Number of characters = 244
>
> Compressing data matrix for division 1
>
> Division 1 has 237 unique site patterns
>
> The MCMC sampler will use the following moves:
>
> With prob. Chain will change
>
> 4.76 % param. 2 (gamma shape) with multiplier
>
> 23.81 % param. 3 (topology and branch lengths) with LOCAL
>
> 71.43 % param. 3 (topology and branch lengths) with
>
>extending TBR
>
> Creating parsimony (bitset) matrix for division 1
>
> Initializing conditional likelihoods for terminals
>
> Initializing conditional likelihoods for internal nodes
>
> Allocating space for SPR parsimony sets
>
> Initial log likelihoods for run 1:
>
> Chain 1 -- -75920.577377
>
> Chain 2 -- -75862.145048
>
> Chain 3 -- -75641.977437
>
>
>
> Chain results:
>
>
>
> 1 -- [-75911.143] (-75862.145) (-75641.977) [...5 remote
>
>chains...]
>
>------------------------------------------------------------------------
>
>-----
>
>One of the processes started by mpirun has exited with a nonzero exit
>
>code. This typically indicates that the process finished in error.
>
>If your process did not finish in error, be sure to include a "return
>
>0" or "exit(0)" in your C code before exiting the application.
>
>
>
>PID 7660 failed on node n0 (127.0.0.1) due to signal 15.
>
>------------------------------------------------------------------------
>
>-----
>
>leblanc_at_bruce:~/Desktop/test$ lamhalt
>
>
>
>LAM 7.1.1/MPI 2 C++/ROMIO - Indiana University
>
>
>
>leblanc_at_bruce:~/Desktop/test$
>
>
>
>
>
>>-----Original Message-----
>>
>>From: Andy Vierstraete [mailto:andy.vierstraete_at_[hidden]]
>>
>>Sent: Tuesday, December 13, 2005 9:07 AM
>>
>>To: leblanc_at_[hidden] <mailto:leblanc_at_[hidden]>
>>
>>Subject: Re: LAM: LAM and MrBayes hangs on larger file
>>
>>
>>
>>Hi Robert,
>>
>>
>>
>>Here is the file,
>>
>>
>>
>>Thanks for trying
>>
>>
>>
>>Andy
>>
>>
>>
>>Robert LeBlanc wrote:
>>
>>
>>
>>
>>
>>>We run Mr. Bayes here. If you want to send me your Bayes file, I can
>>>
>>>
>>>
>give
>
>
>
>>it
>>
>>
>>
>>>a run here and see if I get the same results.
>>>
>>>
>>>
>>>Robert LeBlanc
>>>
>>>BioAg Computer Support
>>>
>>>Brigham Young University
>>>
>>>
>>>
>>>-----Original Message-----
>>>
>>>From: lam-bounces_at_[hidden] <mailto:lam-bounces_at_[hidden]> [mailto:lam-bounces_at_[hidden]] On
>>>
>>>
>>>
>Behalf
>
>
>
>>Of
>>
>>
>>
>>>Andy Vierstraete
>>>
>>>Sent: Tuesday, December 13, 2005 1:56 AM
>>>
>>>To: lam_at_[hidden] <mailto:lam_at_[hidden]>
>>>
>>>Subject: LAM: LAM and MrBayes hangs on larger file
>>>
>>>
>>>
>>>Hi,
>>>
>>>
>>>
>>>I installed LAM-MPI and MrBayes, and with a testfile with 34 taxa, it
>>>
>>>runs without problems. When I try to start a larger file (174 taxa),
>>>
>>>MrBayes starts reading the first 111 taxa, and then it stops and
>>>
>>>
>>>
>nothing
>
>
>
>>>happens anymore.
>>>
>>>When I remove node 1 (mermis.ugent.be), than MrBayes (parallel
>>>
>>>
>>>
>version)
>
>
>
>>>runs that file without problems.
>>>
>>>
>>>
>>>node 2 : Molfyl1 : Suse 8.2 on dual Athlon MP2000
>>>
>>>node 1 : Mermis : Suse 10 (32-bit version) on Athlon 64 3000+
>>>
>>>
>>>
>>>Any suggestions what the problem is and how to solve it ??
>>>
>>>
>>>
>>>Thanks a lot,
>>>
>>>
>>>
>>>Andy
>>>
>>>
>>>
>>>
>>>
>>>this is the output :
>>>
>>>
>>>
>>-----------------------------------------------------------------------
>>
>>
>>
>-
>
>
>
>>>avierstr_at_molfyl1:~/david> lamboot ../hostfile
>>>
>>>
>>>
>>>LAM 7.1.1/MPI 2 C++/ROMIO - Indiana University
>>>
>>>
>>>
>>>Enter passphrase for key '/home/avierstr/.ssh/id_dsa':
>>>
>>>Enter passphrase for key '/home/avierstr/.ssh/id_dsa':
>>>
>>>avierstr_at_molfyl1:~/david> lamnodes
>>>
>>>n0 molfyl1.UGent.be:2:origin,this_node
>>>
>>>n1 mermis.ugent.be:1:
>>>
>>>avierstr_at_molfyl1:~/david> mpiexec mb311mpi
>>>
>>> MrBayes v3.1.1
>>>
>>>
>>>
>>> (Bayesian Analysis of Phylogeny)
>>>
>>>
>>>
>>> (Parallel version)
>>>
>>> (3 processors available)
>>>
>>>
>>>
>>> by
>>>
>>>
>>>
>>> John P. Huelsenbeck and Fredrik Ronquist
>>>
>>>
>>>
>>> Section of Ecology, Behavior and Evolution
>>>
>>> Division of Biological Sciences
>>>
>>> University of California, San Diego
>>>
>>> johnh_at_[hidden] <mailto:johnh_at_[hidden]>
>>>
>>>
>>>
>>> School of Computational Science
>>>
>>> Florida State University
>>>
>>> ronquist_at_[hidden] <mailto:ronquist_at_[hidden]>
>>>
>>>
>>>
>>> Distributed under the GNU General Public License
>>>
>>>
>>>
>>> Type "help" or "help <command>" for information
>>>
>>> on the commands that are available.
>>>
>>>
>>>
>>>
>>>
>>>MrBayes > execute CE.pau
>>>
>>>
>>>
>>> Executing file "CE.pau"
>>>
>>> UNIX line termination
>>>
>>> Longest line length = 123
>>>
>>> Parsing file
>>>
>>> Expecting NEXUS formatted file
>>>
>>> Reading data block
>>>
>>> Allocated matrix
>>>
>>> Matrix has 174 taxa and 244 characters
>>>
>>> Data matrix is interleaved
>>>
>>> Data is Protein
>>>
>>> Missing data coded as N
>>>
>>> Gaps coded as -
>>>
>>> Setting default partition (does not divide up characters).
>>>
>>> Taxon 1 -> ArabidopsisNsHb1
>>>
>>> Taxon 2 -> EuryaleNsHb
>>>
>>> Taxon 3 -> MarchantiaNsHb
>>>
>>> Taxon 4 -> TremaNsHb
>>>
>>> Taxon 5 -> OryzaNsHb1
>>>
>>> Taxon 6 -> PhyscomitrellaNsHb
>>>
>>> Taxon 7 -> CanavaliaSHb
>>>
>>> Taxon 8 -> LupinSHb
>>>
>>> Taxon 9 -> SesbaniaSHb
>>>
>>> Taxon 10 -> CasuarinaSHb
>>>
>>> Taxon 11 -> AgrtumGCS
>>>
>>> Taxon 12 -> BacsubGCS
>>>
>>> Taxon 13 -> Chrvio1GCS
>>>
>>> Taxon 14 -> EsccolGCS
>>>
>>> Taxon 15 -> GeosulGCS
>>>
>>> Taxon 16 -> HalmarGCS
>>>
>>> Taxon 17 -> SinmelGCS
>>>
>>> Taxon 18 -> VibvulGCS
>>>
>>> Taxon 19 -> AerperPgb
>>>
>>> Taxon 20 -> MetacePgb
>>>
>>> Taxon 21 -> Halmar
>>>
>>> Taxon 22 -> Mycavi1
>>>
>>> Taxon 23 -> Myxxan1
>>>
>>> Taxon 24 -> Nospun2
>>>
>>> Taxon 25 -> Solusi1
>>>
>>> Taxon 26 -> Syncys
>>>
>>> Taxon 27 -> Xanaxo
>>>
>>> Taxon 28 -> Agrtum1
>>>
>>> Taxon 29 -> Borper1
>>>
>>> Taxon 30 -> Burcep1
>>>
>>> Taxon 31 -> Chlaur
>>>
>>> Taxon 32 -> Deirad
>>>
>>> Taxon 33 -> Exiguo
>>>
>>> Taxon 34 -> Kinrad
>>>
>>> Taxon 35 -> Lepint
>>>
>>> Taxon 36 -> Mycavi2
>>>
>>> Taxon 37 -> Staaur
>>>
>>> Taxon 38 -> Acifer3
>>>
>>> Taxon 39 -> Bdebac2
>>>
>>> Taxon 40 -> Borper2
>>>
>>> Taxon 41 -> Camjej
>>>
>>> Taxon 42 -> Mycavi3
>>>
>>> Taxon 43 -> Novaro
>>>
>>> Taxon 44 -> CyanmerSDgb
>>>
>>> Taxon 45 -> Thapse1SDgb
>>>
>>> Taxon 46 -> Chocri1FHb
>>>
>>> Taxon 47 -> Chocri22x2Hb
>>>
>>> Taxon 48 -> Thapse22x2Hb
>>>
>>> Taxon 49 -> Chlrei12x2Hb
>>>
>>> Taxon 50 -> Paramecium
>>>
>>> Taxon 51 -> Arabidopsis
>>>
>>> Taxon 52 -> Oryza
>>>
>>> Taxon 53 -> BacantF
>>>
>>> Taxon 54 -> DeiradF
>>>
>>> Taxon 55 -> EsccolF
>>>
>>> Taxon 56 -> ExiguoF
>>>
>>> Taxon 57 -> MagmagF
>>>
>>> Taxon 58 -> MyctubF
>>>
>>> Taxon 59 -> OceiheF
>>>
>>> Taxon 60 -> RhodopirellF
>>>
>>> Taxon 61 -> PseaerF
>>>
>>> Taxon 62 -> RalmetF
>>>
>>> Taxon 63 -> StaaurF
>>>
>>> Taxon 64 -> Strave1F
>>>
>>> Taxon 65 -> VibchoF
>>>
>>> Taxon 66 -> Aquaeox
>>>
>>> Taxon 67 -> Brajap1x
>>>
>>> Taxon 68 -> Camjejx
>>>
>>> Taxon 69 -> Chrvio2x
>>>
>>> Taxon 70 -> Deshafx
>>>
>>> Taxon 71 -> Gloviox
>>>
>>> Taxon 72 -> Rhobalx
>>>
>>> Taxon 73 -> Vitstex
>>>
>>> Taxon 74 -> Pseaerx
>>>
>>> Taxon 75 -> Thefusx
>>>
>>> Taxon 76 -> Aspnid1
>>>
>>> Taxon 77 -> Debhan1
>>>
>>> Taxon 78 -> Dicdis1
>>>
>>> Taxon 79 -> Gialam
>>>
>>> Taxon 80 -> Neucra1
>>>
>>> Taxon 81 -> Saccer1
>>>
>>> Taxon 82 -> Schpom1
>>>
>>> Taxon 83 -> HomoNgb
>>>
>>> Taxon 84 -> GallusNgb
>>>
>>> Taxon 85 -> DanioNgb
>>>
>>> Taxon 86 -> HomoCygb
>>>
>>> Taxon 87 -> GallusCygb
>>>
>>> Taxon 88 -> DanioCygb1
>>>
>>> Taxon 89 -> HomoA
>>>
>>> Taxon 90 -> SqualusA
>>>
>>> Taxon 91 -> AnserA
>>>
>>> Taxon 92 -> HomoB
>>>
>>> Taxon 93 -> AnserB
>>>
>>> Taxon 94 -> SqualusB
>>>
>>> Taxon 95 -> HomoMb
>>>
>>> Taxon 96 -> ThunnusMb
>>>
>>> Taxon 97 -> GallusMb
>>>
>>> Taxon 98 -> GalgalEyegb
>>>
>>> Taxon 99 -> TetnigHbX
>>>
>>> Taxon 100 -> XentroHbX
>>>
>>> Taxon 101 -> PetmatHb2
>>>
>>> Taxon 102 -> MyxgluHb3
>>>
>>> Taxon 103 -> Cioint1
>>>
>>> Taxon 104 -> CauareHbC
>>>
>>> Taxon 105 -> Lumterb
>>>
>>> Taxon 106 -> Lumterc
>>>
>>> Taxon 107 -> MacdecB
>>>
>>> Taxon 108 -> MacdecC
>>>
>>> Taxon 109 -> Tylhet2B
>>>
>>> Taxon 110 -> Tylhet2A
>>>
>>> Taxon 111 -> AmpornDHP
>>>
>>>
>>>
>>>(Pressed CTRL-C)
>>>
>>>
>>>
>>>
>>>
>>>sending sig_INT to mpirun
>>>
>>>
>>>
>>-----------------------------------------------------------------------
>>
>>
>>
>--
>
>
>
>>---
>>
>>
>>
>>>-
>>>
>>>One of the processes started by mpirun has exited with a nonzero exit
>>>
>>>code. This typically indicates that the process finished in error.
>>>
>>>If your process did not finish in error, be sure to include a "return
>>>
>>>0" or "exit(0)" in your C code before exiting the application.
>>>
>>>
>>>
>>>PID 9651 failed on node n0 (157.193.95.1) due to signal 15.
>>>
>>>
>>>
>>-----------------------------------------------------------------------
>>
>>
>>
>--
>
>
>
>>---
>>
>>
>>
>>>-
>>>
>>>mpirun failed with exit status 15
>>>
>>>avierstr_at_molfyl1:~/david>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>--
>>
>>*********************************************************************
>>
>>* Youth is a wonderful thing. What a crime to waste it on children. *
>>
>>* (George Bernard Shaw) *
>>
>>*********************************************************************
>>
>>
>>
>>
>>
>>Andy Vierstraete
>>
>>Department of Biology
>>
>>University of Ghent
>>
>>K. L. Ledeganckstraat 35
>>
>>B-9000 Gent
>>
>>Belgium
>>
>>phone : 09-264.52.66
>>
>>fax : 09-264.87.93
>>
>>http://allserv.UGent.be/~avierstr/ <http://allserv.UGent.be/%7Eavierstr/>
>>
>>
>>
>
>
>
>
>
>
>
>
>
>--
>
>*********************************************************************
>
>* Youth is a wonderful thing. What a crime to waste it on children. *
>
>* (George Bernard Shaw) *
>
>*********************************************************************
>
>
>
>
>
>Andy Vierstraete
>
>Department of Biology
>
>University of Ghent
>
>K. L. Ledeganckstraat 35
>
>B-9000 Gent
>
>Belgium
>
>phone : 09-264.52.66
>
>fax : 09-264.87.93
>
>http://allserv.UGent.be/~avierstr/ <http://allserv.UGent.be/%7Eavierstr/>
>
--
*********************************************************************
* Youth is a wonderful thing. What a crime to waste it on children. *
* (George Bernard Shaw) *
*********************************************************************
Andy Vierstraete
Department of Biology
University of Ghent
K. L. Ledeganckstraat 35
B-9000 Gent
Belgium
phone : 09-264.52.66
fax : 09-264.87.93
http://allserv.UGent.be/~avierstr/
|
