It looks like you are mixing an MPICH-compiled executable and trying to
run it in a LAM universe. You need to have an mpiblast executable that
was compiled with the same version of LAM that you are using. This
will likely entail getting a different RPM or compiling from source
(I'm not familiar with the internals of mpiblast and cannot comment on
how it works).
On May 18, 2005, at 6:51 AM, Debasis Satapathy wrote:
> We need assistance from the users of mpiblast regarding the execution
> on
> AMD64 grid environment.
>
> 1.System Configuration:
> ---------------------
> Operating System:
> Red Hat Enterprise Linux 3.0 for AMD 64 Architecture
> Sun Fire v20z machine
> Bio Clusture Grid Engine
> 2. We have downloaded the NCBI-2.2.10-1.x86_64.rpm and
> mpiblast-1.3.0-1.x86_64.rpm from scalableinformatics.com. When we
> installed NCBI: all the binaries like blastall are loaded onto
> /usr/bin.
> and mpiblast: all the binaries are loaded onto /usr/local/bin ex:
> mpiblast, mpiformatdb.
> 3. We have created one common blastdb in /apps/Databases/blastdb/ using
> mpiformatdb -i scaffolds --nfrags=250 N 250 -p F. ( 250 fragments have
> been created).
> 4. Lamboot and lamnodes are also working fine as we checked by running
> clustalmpi.sh through mpirun command.
>
> 5. But we are unable to run mpiblast through mpirun script as it gives
> the
> follwing error:
> ( I am attaching a file containing the script and the error message
> ).
>
> Our query:
> ---------
> 1. Why is this happening?
> 2. Is there an NCBI.TAR.GZ pacakge that supports AMD64(X86_64) for RH
> Enterprise WS 3.0?
> 3. While installing NCBI rpms we were able to find only binary files.
> We
> did not find the data files of NCBI ex: blosum, pam etc in any path in
> Is there any specific path they may be located?
> Please assist us in proper integration and running of mpiblast
> tool. We appreciate your early suggestions.
>
> Regards.
> Sravan.
>
>
>
>
> <mpiblast_run>
>
> _______________________________________________
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--
{+} Jeff Squyres
{+} jsquyres_at_[hidden]
{+} http://www.lam-mpi.org/
|
