On Apr 18, 2005, at 9:25 AM, Vinicius de Lima wrote:
> HELP!!!
Please note that this is the LAM/MPI mailing list. For problems with
mpiblast, I think you'll need to contact the mpiblast authors (although
you might want to be a little more verbose than "HELP!" ;-) ).
Good luck.
>
> [root_at_swingle mpiblast-1.3.0]# make
> Making all in src
> make[1]: Entering directory `/home/swingle/cluster/mpiblast-1.3.0/src'
> make all-am
> make[2]: Entering directory `/home/swingle/cluster/mpiblast-1.3.0/src'
> if mpic++ -DHAVE_CONFIG_H -I. -I. -I. -I../include/
> -I../ncbi//include/ -DUSING_MPI -DINSTALL_PREFIX="\"/usr/local\""
> -g -O2 -MT mpiblast-blastjob.o -MD -MP -MF
> ".deps/mpiblast-blastjob.Tpo" -c -o mpiblast-blastjob.o `test -f
> 'blastjob.cpp' || echo './'`blastjob.cpp; \
> then mv -f ".deps/mpiblast-blastjob.Tpo" ".deps/mpiblast-blastjob.Po";
> else rm -f ".deps/mpiblast-blastjob.Tpo"; exit 1; fi
> In file included from blastjob.cpp:54:
> mpiblast.hpp:85:22: blastdef.h: Arquivo ou diretório não encontrado
> mpiblast.hpp:86:18: ncbi.h: Arquivo ou diretório não encontrado
> mpiblast.hpp:87:20: objseq.h: Arquivo ou diretório não encontrado
> mpiblast.hpp:88:21: ncbithr.h: Arquivo ou diretório não encontrado
> mpiblast.hpp:89:21: ncbiwin.h: Arquivo ou diretório não encontrado
> mpiblast.hpp:90:33: connect/ncbi_core_c.h: Arquivo ou diretório não
> encontrado
> In file included from blastjob.cpp:54:
> mpiblast.hpp:141: error: `ValNodePtr' has not been declared
> mpiblast.hpp:141: error: ISO C++ forbids declaration of `bs_cache'
> with no type
> mpiblast.hpp:162: error: `ValNodePtr' does not name a type
> mpiblast.hpp: In constructor `QueryData::QueryData(BlastJob&, int)':
> mpiblast.hpp:142: error: class `QueryData' does not have any field
> named `bioseq_cache'
> mpiblast.hpp: In copy constructor `QueryData::QueryData(const
> QueryData&)':
> mpiblast.hpp:146: error: class `QueryData' does not have any field
> named `bioseq_cache'
> mpiblast.hpp:146: error: 'const class QueryData' has no member named
> 'bioseq_cache'
> mpiblast.hpp: In member function `QueryData&
> QueryData::operator=(const QueryData&)':
> mpiblast.hpp:151: error: `bioseq_cache' undeclared (first use this
> function)
> mpiblast.hpp:151: error: (Each undeclared identifier is reported only
> once for each function it appears in.)
> mpiblast.hpp:151: error: 'const class QueryData' has no member named
> 'bioseq_cache'
> mpiblast.hpp: At global scope:
> mpiblast.hpp:191: error: `SeqAlignPtr' was not declared in this scope
> mpiblast.hpp:191: error: template argument 1 is invalid
> mpiblast.hpp:191: error: template argument 2 is invalid
> mpiblast.hpp:192: error: ISO C++ forbids declaration of `results' with
> no type
> mpiblast.hpp:245: error: `SeqAlignPtr' has not been declared
> mpiblast.hpp:245: error: `SeqIdPtr' has not been declared
> mpiblast.hpp:245: error: ISO C++ forbids declaration of `sap_p' with
> no type
> mpiblast.hpp:245: error: ISO C++ forbids declaration of `id_list' with
> no type
> mpiblast.hpp:310: error: `SeqAlignPtr' was not declared in this scope
> mpiblast.hpp:310: error: template argument 1 is invalid
> mpiblast.hpp:310: error: template argument 2 is invalid
> mpiblast.hpp:310: error: template argument 2 is invalid
> mpiblast.hpp:310: error: template argument 4 is invalid
> mpiblast.hpp:310: error: ISO C++ forbids declaration of `results_map'
> with no type
> mpic++: No such file or directory
> make[2]: ** [mpiblast-blastjob.o] Erro 1
> make[2]: Leaving directory `/home/swingle/cluster/mpiblast-1.3.0/src'
> make[1]: ** [all] Erro 2
> make[1]: Leaving directory `/home/swingle/cluster/mpiblast-1.3.0/src'
> make: ** [all-recursive] Erro 1
> _______________________________________________
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>
--
{+} Jeff Squyres
{+} jsquyres_at_[hidden]
{+} http://www.lam-mpi.org/
|
