Hello
First some things about icc. ICC is using by default the gcc stdc++
libraries if your version is greater than 3.2. The problem is that icc
8.1 sometimes can not find the libstdc++ libraries and headers files. A
workaround is to set GXX_ROOT (c++ libraries and GXX_INCLUDE (c++ header
files) or build lam using the intel c++ libraries (add -cxxlib-icc to
the CXXFLAGS).
Hope it helps
Huy Tran wrote:
> Hi,
> I'm trying to compile lam-7.1.1 with Intel compiler 8.1. I've already
> set environment variables by iccvars.sh. After configuring
> successfully, I got compiling/linking errors as follows:
>
> ... ( truncated by author )
>
> laminfo.o(.text+0x90e9): In function `__sti__$E':
> : undefined reference to `std::allocator<char>::~allocator()'
> laminfo.o(.text+0x90fc): In function `destr_detour315':
> : undefined reference to `std::allocator<char>::~allocator()'
> laminfo.o(.text+0x9116): In function `destr_detour316':
> : undefined reference to `std::allocator<char>::~allocator()'
> laminfo.o(.text+0x9130): In function `destr_detour317':
> : undefined reference to `std::allocator<char>::~allocator()'
> laminfo.o(.text+0x914a): In function `destr_detour318':
> : undefined reference to `std::allocator<char>::~allocator()'
> laminfo.o(.text+0x9164): more undefined references to
> `std::allocator<char>::~allocator()' follow
> laminfo.o(.eh_frame+0x12): In function `.eh_frame_seg':
> : undefined reference to `__gxx_personality_v0'
> make[2]: *** [laminfo] Error 1
> make[2]: Leaving directory `/data/parallel/lam-7.1.1/tools/laminfo'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory `/data/parallel/lam-7.1.1/tools'
> make: *** [all-recursive] Error 1
>
> In Makefile, I already add LDFLAGS and CXXLDFLAGS as in
> http://www.lam-mpi.org/MailArchives/lam/msg08149.php. I guest that
> that is error in linking STL libraries? Please help me solve this
> problem.
>
> BTW, Intel CC&FC are installed in /opt/intel_cc_80 and
> /opt/intel_fc_80 by default.
>
>
> Regards,
>
>------------------------------------------------------------------------
>
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> (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
> || case "$$amf" in *=*) exit 1;; *k*) fail=yes;; *) exit 1;; esac; \
> done && test -z "$$fail"
>tags-recursive:
> list='$(SUBDIRS)'; for subdir in $$list; do \
> test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \
> done
>ctags-recursive:
> list='$(SUBDIRS)'; for subdir in $$list; do \
> test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \
> done
>
>ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
> list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
> unique=`for i in $$list; do \
> if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
> done | \
> $(AWK) ' { files[$$0] = 1; } \
> END { for (i in files) print i; }'`; \
> mkid -fID $$unique
>tags: TAGS
>
>TAGS: tags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
> $(TAGS_FILES) $(LISP)
> tags=; \
> here=`pwd`; \
> if ($(ETAGS) --etags-include --version) >/dev/null 2>&1; then \
> include_option=--etags-include; \
> empty_fix=.; \
> else \
> include_option=--include; \
> empty_fix=; \
> fi; \
> list='$(SUBDIRS)'; for subdir in $$list; do \
> if test "$$subdir" = .; then :; else \
> test ! -f $$subdir/TAGS || \
> tags="$$tags $$include_option=$$here/$$subdir/TAGS"; \
> fi; \
> done; \
> list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
> unique=`for i in $$list; do \
> if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
> done | \
> $(AWK) ' { files[$$0] = 1; } \
> END { for (i in files) print i; }'`; \
> if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
> test -n "$$unique" || unique=$$empty_fix; \
> $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
> $$tags $$unique; \
> fi
>ctags: CTAGS
>CTAGS: ctags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
> $(TAGS_FILES) $(LISP)
> tags=; \
> here=`pwd`; \
> list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
> unique=`for i in $$list; do \
> if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
> done | \
> $(AWK) ' { files[$$0] = 1; } \
> END { for (i in files) print i; }'`; \
> test -z "$(CTAGS_ARGS)$$tags$$unique" \
> || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
> $$tags $$unique
>
>GTAGS:
> here=`$(am__cd) $(top_builddir) && pwd` \
> && cd $(top_srcdir) \
> && gtags -i $(GTAGS_ARGS) $$here
>
>distclean-tags:
> -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
>
>distdir: $(DISTFILES)
> $(am__remove_distdir)
> mkdir $(distdir)
> $(mkdir_p) $(distdir)/config $(distdir)/doc/user $(distdir)/examples/mandelbrot $(distdir)/examples/trivial $(distdir)/examples/wave1d $(distdir)/romio/util $(distdir)/share/include
> @srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; \
> topsrcdirstrip=`echo "$(top_srcdir)" | sed 's|.|.|g'`; \
> list='$(DISTFILES)'; for file in $$list; do \
> case $$file in \
> $(srcdir)/*) file=`echo "$$file" | sed "s|^$$srcdirstrip/||"`;; \
> $(top_srcdir)/*) file=`echo "$$file" | sed "s|^$$topsrcdirstrip/|$(top_builddir)/|"`;; \
> esac; \
> if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
> dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
> if test "$$dir" != "$$file" && test "$$dir" != "."; then \
> dir="/$$dir"; \
> $(mkdir_p) "$(distdir)$$dir"; \
> else \
> dir=''; \
> fi; \
> if test -d $$d/$$file; then \
> if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
> cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
> fi; \
> cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
> else \
> test -f $(distdir)/$$file \
> || cp -p $$d/$$file $(distdir)/$$file \
> || exit 1; \
> fi; \
> done
> list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
> if test "$$subdir" = .; then :; else \
> test -d "$(distdir)/$$subdir" \
> || mkdir "$(distdir)/$$subdir" \
> || exit 1; \
> (cd $$subdir && \
> $(MAKE) $(AM_MAKEFLAGS) \
> top_distdir="../$(top_distdir)" \
> distdir="../$(distdir)/$$subdir" \
> distdir) \
> || exit 1; \
> fi; \
> done
> $(MAKE) $(AM_MAKEFLAGS) \
> top_distdir="$(top_distdir)" distdir="$(distdir)" \
> dist-hook
> -find $(distdir) -type d ! -perm -777 -exec chmod a+rwx {} \; -o \
> ! -type d ! -perm -444 -links 1 -exec chmod a+r {} \; -o \
> ! -type d ! -perm -400 -exec chmod a+r {} \; -o \
> ! -type d ! -perm -444 -exec $(SHELL) $(install_sh) -c -m a+r {} {} \; \
> || chmod -R a+r $(distdir)
>dist-gzip: distdir
> $(AMTAR) chof - $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
> $(am__remove_distdir)
>dist-bzip2: distdir
> $(AMTAR) chof - $(distdir) | bzip2 -9 -c >$(distdir).tar.bz2
> $(am__remove_distdir)
>
>dist-tarZ: distdir
> $(AMTAR) chof - $(distdir) | compress -c >$(distdir).tar.Z
> $(am__remove_distdir)
>
>dist-shar: distdir
> shar $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).shar.gz
> $(am__remove_distdir)
>
>dist-zip: distdir
> -rm -f $(distdir).zip
> zip -rq $(distdir).zip $(distdir)
> $(am__remove_distdir)
>
>dist dist-all: distdir
> $(AMTAR) chof - $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
> $(AMTAR) chof - $(distdir) | bzip2 -9 -c >$(distdir).tar.bz2
> $(am__remove_distdir)
>
># This target untars the dist file and tries a VPATH configuration. Then
># it guarantees that the distribution is self-contained by making another
># tarfile.
>distcheck: dist
> case '$(DIST_ARCHIVES)' in \
> *.tar.gz*) \
> GZIP=$(GZIP_ENV) gunzip -c $(distdir).tar.gz | $(AMTAR) xf - ;;\
> *.tar.bz2*) \
> bunzip2 -c $(distdir).tar.bz2 | $(AMTAR) xf - ;;\
> *.tar.Z*) \
> uncompress -c $(distdir).tar.Z | $(AMTAR) xf - ;;\
> *.shar.gz*) \
> GZIP=$(GZIP_ENV) gunzip -c $(distdir).shar.gz | unshar ;;\
> *.zip*) \
> unzip $(distdir).zip ;;\
> esac
> chmod -R a-w $(distdir); chmod a+w $(distdir)
> mkdir $(distdir)/_build
> mkdir $(distdir)/_inst
> chmod a-w $(distdir)
> dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \
> && dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \
> && cd $(distdir)/_build \
> && ../configure --srcdir=.. --prefix="$$dc_install_base" \
> $(DISTCHECK_CONFIGURE_FLAGS) \
> && $(MAKE) $(AM_MAKEFLAGS) \
> && $(MAKE) $(AM_MAKEFLAGS) dvi \
> && $(MAKE) $(AM_MAKEFLAGS) check \
> && $(MAKE) $(AM_MAKEFLAGS) install \
> && $(MAKE) $(AM_MAKEFLAGS) installcheck \
> && $(MAKE) $(AM_MAKEFLAGS) uninstall \
> && $(MAKE) $(AM_MAKEFLAGS) distuninstallcheck_dir="$$dc_install_base" \
> distuninstallcheck \
> && chmod -R a-w "$$dc_install_base" \
> && ({ \
> (cd ../.. && umask 077 && mkdir "$$dc_destdir") \
> && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" install \
> && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" uninstall \
> && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" \
> distuninstallcheck_dir="$$dc_destdir" distuninstallcheck; \
> } || { rm -rf "$$dc_destdir"; exit 1; }) \
> && rm -rf "$$dc_destdir" \
> && $(MAKE) $(AM_MAKEFLAGS) dist \
> && rm -rf $(DIST_ARCHIVES) \
> && $(MAKE) $(AM_MAKEFLAGS) distcleancheck
> $(am__remove_distdir)
> @(echo "$(distdir) archives ready for distribution: "; \
> list='$(DIST_ARCHIVES)'; for i in $$list; do echo $$i; done) | \
> sed -e '1{h;s/./=/g;p;x;}' -e '$${p;x;}'
>distuninstallcheck:
> @cd $(distuninstallcheck_dir) \
> && test `$(distuninstallcheck_listfiles) | wc -l` -le 1 \
> || { echo "ERROR: files left after uninstall:" ; \
> if test -n "$(DESTDIR)"; then \
> echo " (check DESTDIR support)"; \
> fi ; \
> $(distuninstallcheck_listfiles) ; \
> exit 1; } >&2
>distcleancheck: distclean
> @if test '$(srcdir)' = . ; then \
> echo "ERROR: distcleancheck can only run from a VPATH build" ; \
> exit 1 ; \
> fi
> @test `$(distcleancheck_listfiles) | wc -l` -eq 0 \
> || { echo "ERROR: files left in build directory after distclean:" ; \
> $(distcleancheck_listfiles) ; \
> exit 1; } >&2
>check-am: all-am
>check: check-recursive
>all-am: Makefile all-local
>installdirs: installdirs-recursive
>installdirs-am:
>install: install-recursive
>install-exec: install-exec-recursive
>install-data: install-data-recursive
>uninstall: uninstall-recursive
>
>install-am: all-am
> @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
>
>installcheck: installcheck-recursive
>install-strip:
> $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
> install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
> `test -z '$(STRIP)' || \
> echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
>mostlyclean-generic:
>
>clean-generic:
> -test -z "$(CLEANFILES)" || rm -f $(CLEANFILES)
>
>distclean-generic:
> -rm -f $(CONFIG_CLEAN_FILES)
>
>maintainer-clean-generic:
> @echo "This command is intended for maintainers to use"
> @echo "it deletes files that may require special tools to rebuild."
>clean: clean-recursive
>
>clean-am: clean-generic clean-libtool clean-local mostlyclean-am
>
>distclean: distclean-recursive
> -rm -f $(am__CONFIG_DISTCLEAN_FILES)
> -rm -f Makefile
>distclean-am: clean-am distclean-generic distclean-libtool \
> distclean-local distclean-tags
>
>dvi: dvi-recursive
>
>dvi-am:
>
>html: html-recursive
>
>info: info-recursive
>
>info-am:
>
>install-data-am:
>
>install-exec-am: install-exec-local
> @$(NORMAL_INSTALL)
> $(MAKE) $(AM_MAKEFLAGS) install-exec-hook
>
>install-info: install-info-recursive
>
>install-man:
>
>installcheck-am:
>
>maintainer-clean: maintainer-clean-recursive
> -rm -f $(am__CONFIG_DISTCLEAN_FILES)
> -rm -rf $(top_srcdir)/autom4te.cache
> -rm -f Makefile
>maintainer-clean-am: distclean-am maintainer-clean-generic
>
>mostlyclean: mostlyclean-recursive
>
>mostlyclean-am: mostlyclean-generic mostlyclean-libtool
>
>pdf: pdf-recursive
>
>pdf-am:
>
>ps: ps-recursive
>
>ps-am:
>
>uninstall-am: uninstall-info-am uninstall-local
>
>uninstall-info: uninstall-info-recursive
>
>.PHONY: $(RECURSIVE_TARGETS) CTAGS GTAGS all all-am all-local \
> am--refresh check check-am clean clean-generic clean-libtool \
> clean-local clean-recursive ctags ctags-recursive dist \
> dist-all dist-bzip2 dist-gzip dist-shar dist-tarZ dist-zip \
> distcheck distclean distclean-generic distclean-libtool \
> distclean-local distclean-recursive distclean-tags \
> distcleancheck distdir distuninstallcheck dvi dvi-am html \
> html-am info info-am install install-am install-data \
> install-data-am install-exec install-exec-am \
> install-exec-local install-info install-info-am install-man \
> install-strip installcheck installcheck-am installdirs \
> installdirs-am maintainer-clean maintainer-clean-generic \
> maintainer-clean-recursive mostlyclean mostlyclean-generic \
> mostlyclean-libtool mostlyclean-recursive pdf pdf-am ps ps-am \
> tags tags-recursive uninstall uninstall-am uninstall-info-am \
> uninstall-local
>
>
># We used to have a depend target, but we now use the Automake 1.5
># dependency system. Since some people (Brian) aren't used to this,
># print out a reminder message
>
>depend:
> @ echo "Dependency analysis now done automagically by"
> @ echo "GNU Automake. No need to run 'make depend'"
>
># For building all the examples
>
>lamexamples: $(romio_examples_target)
> @ (cd examples; $(MAKE) all)
> @ $(MAKE) examples-done
>
># Supplement various targets so that we can build ROMIO as well. Note
># that we only build and install ROMIO if ROMIO was selected in
># configure, but we *always* [try to] clean, distclean, and uninstall
># ROMIO. This counts for the corner case where a user could do:
>#
># ./configure --with-romio
># make all install
># ./configure --without-romio
># make uninstall distclean
>#
># If we didn't always traverse into the romio/ directory for uninstall
># and clean, ROMIO will still be left installed, which would not be
># social for us to do. This scenario doesn't account for all cases
># (mainly because ROMIO still has its own configure script) but it
># does handle the majority of cases. For example, the following
># scenario won't be handled correctly:
>#
># ./configure --with-romio
># make all install
># make distclean
># ./configure --without-romio
># make uninstall
>#
># ROMIO will still left installed after this becuase ROMIO's
># ./configure won't have been triggered again, and therefore there
># will be no Makefile (et al.) in the romio/ directory to travese and
># do the uninstall.
>#
># Someday, when ROMIO is fully integrated into LAM, this won't be an
># issue.
>
># Need to have a separate $(MAKE) invocation for the "all-done" target
># so that make won't perform the "all-done" target before the
># $(romio_all_target). This is the only way to force/guarantee the
># ordering.
>
>all-local: $(romio_all_target)
> @ $(MAKE) all-done
>
>install-exec-local: $(romio_install_target)
>
># The presence of the .lam_built file triggers whether the all-done
># target generates the "LAM has been built..." message.
>
>clean-local: romio-clean
> @ rm -f .lam_built
>
>distclean-local: romio-distclean
>
>uninstall-local: romio-uninstall
>
># Be sure to set LAMHOME properly so that hcc/hcp/hf77 use the right
># libraries/include files (to avoid conflicts if the user may already
># have a LAM installed, and already have LAMHOME set somewhere else).
>
># Another bug in ROMIO -- we have to go set the unix permissions on
># directories under $LAMHOME/include to be 755 again. ROMIO does a
># chmod 644 $LAMHOME/include/* -- ick! The ROMIO authors have been
># notified of this. 13 June 1999/JMS.
>
># Automakeizm -- check to see if we already built ROMIO. "make
># install" implicitly invokes "make all" first (in a roundabout way).
>
>romio-all:
> @ echo "Making all in romio"
> @ (if test ! -f romio/.lam_built; then cd romio; $(MAKE) && touch .lam_built; fi)
>
>romio-install:
> @ echo "Making install in romio"
> @ if test ! -f romio/.lam_built ; then \
> $(MAKE) romio-all && $(MAKE) romio-install-redirect ; \
> else \
> $(MAKE) romio-install-redirect; \
> fi
>
>romio-install-redirect:
> @ (if test -d romio; then \
> cd romio ; \
> if test -f Makefile; then \
> ( $(MAKE) install PREFIX=$(DESTDIR)$(prefix) \
> DATADIR=$(DESTDIR)$(datadir) \
> LIBDIR=$(DESTDIR)$(libdir) \
> INCLUDEDIR=$(DESTDIR)$(includedir) \
> MANDIR=$(DESTDIR)$(mandir); ) \
> fi ; \
> fi)
>
>romio-examples:
> @ echo "Making lamexamples in romio"
> @ (if test -d romio; then \
> cd romio; \
> if test -f Makefile; then \
> if test -f .lam_built ; then \
> ( cd test; \
> $(MAKE) CC=mpicc F77=mpif77 LIBS= USER_CFLAGS="$(CFLAGS)" USER_FFLAGS="$(FFLAGS) $(ROMIO_FLAGS)" ) ; \
> else \
> echo "*** Error: it does not appear that ROMIO has been built yet." ; \
> echo "*** I cannot tell if LAM was built yet or not, so I will abort." ; \
> echo "*** Please build ROMIO the normal LAM build interface" ; \
> echo "*** and then attempt to build the ROMIO again." ; \
> fi; \
> fi; \
> fi )
>
>romio-clean:
> @ echo "Making clean in romio"
> @ (if test -d romio; then \
> cd romio; \
> rm -f .lam_built; \
> if test -f Makefile ; then \
> $(MAKE) clean; \
> fi; \
> fi )
>
>romio-distclean:
> @ echo "Making distclean in romio"
> @ (if test -d romio; then \
> cd romio; \
> rm -f .lam_built config.command; \
> if test -f Makefile ; \
> then $(MAKE) cleanall; \
> fi ; \
> fi)
>
>romio-uninstall:
> @ echo "Making uninstall in romio"
> @ if test -f romio/.lam_built ; then \
> $(MAKE) romio-uninstall-redirect; \
> fi
>
># This is just so ugly; it's painful.
>
>romio-uninstall-redirect:
> @ ( cd romio; $(MAKE) uninstall PREFIX=$(DESTDIR)$(prefix) \
> DATADIR=$(DESTDIR)$(datadir) \
> LIBDIR=$(DESTDIR)$(libdir) \
> INCLUDEDIR=$(DESTDIR)$(includedir) \
> MANDIR=$(DESTDIR)$(mandir); )
> if test -f $(DESTDIR)$(libdir)/liblammpio.a; then \
> rm -f $(DESTDIR)$(libdir)/liblammpio.a; \
> fi
>
>#
># For printing friendly messages at the end :-)
>#
>
>examples-done:
> @echo
> @echo "==========================================================================="
> @echo
> @echo "The examples for LAM/MPI $(LAM_VERSION) have been built."
> @echo
> @echo "Look in the subdirectories of examples/ for each of"
> @echo "the example programs. Each subdirectory has a README file"
> @echo "that explains how to run it, etc."
> @echo
> @echo "==========================================================================="
>
>all-done: .lam_built
>.lam_built:
> @ echo
> @ echo "==========================================================================="
> @ echo
> @ echo "LAM/MPI $(LAM_VERSION) has been built."
> @ echo
> @ echo "You now need to install it with \"make install\""
> @ echo
> @ echo "==========================================================================="
> @ touch .lam_built
>
>install-exec-hook:
> @echo
> @echo "==========================================================================="
> @echo
> @echo "Installation of LAM/MPI $(LAM_VERSION) is complete."
> @echo
> @echo "Be sure to visit the LAM/MPI web page: http://www.lam-mpi.org/"
> @echo
> @echo "The FAQ and LAM mailing list archives (both accessable from the web page)"
> @echo "contain much information about getting started with LAM/MPI, as well as"
> @echo "solutions to common problems."
> @echo
> @echo "==========================================================================="
> @echo
>
>#
># For making the distribution. LAM maintainers only. It won't work
># for you. :-)
>#
># Requires the "sowing" package from ftp://ftp.mcs.anl.gov/ to make
># the man pages.
>#
>
>dist-hook:
> csh -f config/distscript.csh $(DESTDIR)$(distdir)
># Tell versions [3.59,3.63) of GNU make to not export all variables.
># Otherwise a system limit (for SysV at least) may be exceeded.
>.NOEXPORT:
>
>
>------------------------------------------------------------------------
>
>_______________________________________________
>This list is archived at http://www.lam-mpi.org/MailArchives/lam/
>
|
