Hi,
I'm trying to compile lam-7.1.1 with Intel compiler 8.1. I've already
set environment variables by iccvars.sh. After configuring successfully,
I got compiling/linking errors as follows:
... ( truncated by author )
laminfo.o(.text+0x90e9): In function `__sti__$E':
: undefined reference to `std::allocator<char>::~allocator()'
laminfo.o(.text+0x90fc): In function `destr_detour315':
: undefined reference to `std::allocator<char>::~allocator()'
laminfo.o(.text+0x9116): In function `destr_detour316':
: undefined reference to `std::allocator<char>::~allocator()'
laminfo.o(.text+0x9130): In function `destr_detour317':
: undefined reference to `std::allocator<char>::~allocator()'
laminfo.o(.text+0x914a): In function `destr_detour318':
: undefined reference to `std::allocator<char>::~allocator()'
laminfo.o(.text+0x9164): more undefined references to
`std::allocator<char>::~allocator()' follow
laminfo.o(.eh_frame+0x12): In function `.eh_frame_seg':
: undefined reference to `__gxx_personality_v0'
make[2]: *** [laminfo] Error 1
make[2]: Leaving directory `/data/parallel/lam-7.1.1/tools/laminfo'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/data/parallel/lam-7.1.1/tools'
make: *** [all-recursive] Error 1
In Makefile, I already add LDFLAGS and CXXLDFLAGS as in
http://www.lam-mpi.org/MailArchives/lam/msg08149.php. I guest that that
is error in linking STL libraries? Please help me solve this problem.
BTW, Intel CC&FC are installed in /opt/intel_cc_80 and /opt/intel_fc_80
by default.
Regards,
--
Huy Tran, N. H.
{+} High-Performance Computing & Networking
{+} huy_at_[hidden] | huy_at_[hidden]
{+} URL: http://www.dit.hcmut.edu.vn/~huy
{+} Phone: (848)-8647256 (Ext.: 5840)
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END { for (i in files) print i; }'`; \
if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
test -n "$$unique" || unique=$$empty_fix; \
$(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
$$tags $$unique; \
fi
ctags: CTAGS
CTAGS: ctags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
$(TAGS_FILES) $(LISP)
tags=; \
here=`pwd`; \
list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
unique=`for i in $$list; do \
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
done | \
$(AWK) ' { files[$$0] = 1; } \
END { for (i in files) print i; }'`; \
test -z "$(CTAGS_ARGS)$$tags$$unique" \
|| $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
$$tags $$unique
GTAGS:
here=`$(am__cd) $(top_builddir) && pwd` \
&& cd $(top_srcdir) \
&& gtags -i $(GTAGS_ARGS) $$here
distclean-tags:
-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
distdir: $(DISTFILES)
$(am__remove_distdir)
mkdir $(distdir)
$(mkdir_p) $(distdir)/config $(distdir)/doc/user $(distdir)/examples/mandelbrot $(distdir)/examples/trivial $(distdir)/examples/wave1d $(distdir)/romio/util $(distdir)/share/include
@srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; \
topsrcdirstrip=`echo "$(top_srcdir)" | sed 's|.|.|g'`; \
list='$(DISTFILES)'; for file in $$list; do \
case $$file in \
$(srcdir)/*) file=`echo "$$file" | sed "s|^$$srcdirstrip/||"`;; \
$(top_srcdir)/*) file=`echo "$$file" | sed "s|^$$topsrcdirstrip/|$(top_builddir)/|"`;; \
esac; \
if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
if test "$$dir" != "$$file" && test "$$dir" != "."; then \
dir="/$$dir"; \
$(mkdir_p) "$(distdir)$$dir"; \
else \
dir=''; \
fi; \
if test -d $$d/$$file; then \
if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
fi; \
cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
else \
test -f $(distdir)/$$file \
|| cp -p $$d/$$file $(distdir)/$$file \
|| exit 1; \
fi; \
done
list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
if test "$$subdir" = .; then :; else \
test -d "$(distdir)/$$subdir" \
|| mkdir "$(distdir)/$$subdir" \
|| exit 1; \
(cd $$subdir && \
$(MAKE) $(AM_MAKEFLAGS) \
top_distdir="../$(top_distdir)" \
distdir="../$(distdir)/$$subdir" \
distdir) \
|| exit 1; \
fi; \
done
$(MAKE) $(AM_MAKEFLAGS) \
top_distdir="$(top_distdir)" distdir="$(distdir)" \
dist-hook
-find $(distdir) -type d ! -perm -777 -exec chmod a+rwx {} \; -o \
! -type d ! -perm -444 -links 1 -exec chmod a+r {} \; -o \
! -type d ! -perm -400 -exec chmod a+r {} \; -o \
! -type d ! -perm -444 -exec $(SHELL) $(install_sh) -c -m a+r {} {} \; \
|| chmod -R a+r $(distdir)
dist-gzip: distdir
$(AMTAR) chof - $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
$(am__remove_distdir)
dist-bzip2: distdir
$(AMTAR) chof - $(distdir) | bzip2 -9 -c >$(distdir).tar.bz2
$(am__remove_distdir)
dist-tarZ: distdir
$(AMTAR) chof - $(distdir) | compress -c >$(distdir).tar.Z
$(am__remove_distdir)
dist-shar: distdir
shar $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).shar.gz
$(am__remove_distdir)
dist-zip: distdir
-rm -f $(distdir).zip
zip -rq $(distdir).zip $(distdir)
$(am__remove_distdir)
dist dist-all: distdir
$(AMTAR) chof - $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
$(AMTAR) chof - $(distdir) | bzip2 -9 -c >$(distdir).tar.bz2
$(am__remove_distdir)
# This target untars the dist file and tries a VPATH configuration. Then
# it guarantees that the distribution is self-contained by making another
# tarfile.
distcheck: dist
case '$(DIST_ARCHIVES)' in \
*.tar.gz*) \
GZIP=$(GZIP_ENV) gunzip -c $(distdir).tar.gz | $(AMTAR) xf - ;;\
*.tar.bz2*) \
bunzip2 -c $(distdir).tar.bz2 | $(AMTAR) xf - ;;\
*.tar.Z*) \
uncompress -c $(distdir).tar.Z | $(AMTAR) xf - ;;\
*.shar.gz*) \
GZIP=$(GZIP_ENV) gunzip -c $(distdir).shar.gz | unshar ;;\
*.zip*) \
unzip $(distdir).zip ;;\
esac
chmod -R a-w $(distdir); chmod a+w $(distdir)
mkdir $(distdir)/_build
mkdir $(distdir)/_inst
chmod a-w $(distdir)
dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \
&& dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \
&& cd $(distdir)/_build \
&& ../configure --srcdir=.. --prefix="$$dc_install_base" \
$(DISTCHECK_CONFIGURE_FLAGS) \
&& $(MAKE) $(AM_MAKEFLAGS) \
&& $(MAKE) $(AM_MAKEFLAGS) dvi \
&& $(MAKE) $(AM_MAKEFLAGS) check \
&& $(MAKE) $(AM_MAKEFLAGS) install \
&& $(MAKE) $(AM_MAKEFLAGS) installcheck \
&& $(MAKE) $(AM_MAKEFLAGS) uninstall \
&& $(MAKE) $(AM_MAKEFLAGS) distuninstallcheck_dir="$$dc_install_base" \
distuninstallcheck \
&& chmod -R a-w "$$dc_install_base" \
&& ({ \
(cd ../.. && umask 077 && mkdir "$$dc_destdir") \
&& $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" install \
&& $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" uninstall \
&& $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" \
distuninstallcheck_dir="$$dc_destdir" distuninstallcheck; \
} || { rm -rf "$$dc_destdir"; exit 1; }) \
&& rm -rf "$$dc_destdir" \
&& $(MAKE) $(AM_MAKEFLAGS) dist \
&& rm -rf $(DIST_ARCHIVES) \
&& $(MAKE) $(AM_MAKEFLAGS) distcleancheck
$(am__remove_distdir)
@(echo "$(distdir) archives ready for distribution: "; \
list='$(DIST_ARCHIVES)'; for i in $$list; do echo $$i; done) | \
sed -e '1{h;s/./=/g;p;x;}' -e '$${p;x;}'
distuninstallcheck:
@cd $(distuninstallcheck_dir) \
&& test `$(distuninstallcheck_listfiles) | wc -l` -le 1 \
|| { echo "ERROR: files left after uninstall:" ; \
if test -n "$(DESTDIR)"; then \
echo " (check DESTDIR support)"; \
fi ; \
$(distuninstallcheck_listfiles) ; \
exit 1; } >&2
distcleancheck: distclean
@if test '$(srcdir)' = . ; then \
echo "ERROR: distcleancheck can only run from a VPATH build" ; \
exit 1 ; \
fi
@test `$(distcleancheck_listfiles) | wc -l` -eq 0 \
|| { echo "ERROR: files left in build directory after distclean:" ; \
$(distcleancheck_listfiles) ; \
exit 1; } >&2
check-am: all-am
check: check-recursive
all-am: Makefile all-local
installdirs: installdirs-recursive
installdirs-am:
install: install-recursive
install-exec: install-exec-recursive
install-data: install-data-recursive
uninstall: uninstall-recursive
install-am: all-am
@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
installcheck: installcheck-recursive
install-strip:
$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
`test -z '$(STRIP)' || \
echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
mostlyclean-generic:
clean-generic:
-test -z "$(CLEANFILES)" || rm -f $(CLEANFILES)
distclean-generic:
-rm -f $(CONFIG_CLEAN_FILES)
maintainer-clean-generic:
@echo "This command is intended for maintainers to use"
@echo "it deletes files that may require special tools to rebuild."
clean: clean-recursive
clean-am: clean-generic clean-libtool clean-local mostlyclean-am
distclean: distclean-recursive
-rm -f $(am__CONFIG_DISTCLEAN_FILES)
-rm -f Makefile
distclean-am: clean-am distclean-generic distclean-libtool \
distclean-local distclean-tags
dvi: dvi-recursive
dvi-am:
html: html-recursive
info: info-recursive
info-am:
install-data-am:
install-exec-am: install-exec-local
@$(NORMAL_INSTALL)
$(MAKE) $(AM_MAKEFLAGS) install-exec-hook
install-info: install-info-recursive
install-man:
installcheck-am:
maintainer-clean: maintainer-clean-recursive
-rm -f $(am__CONFIG_DISTCLEAN_FILES)
-rm -rf $(top_srcdir)/autom4te.cache
-rm -f Makefile
maintainer-clean-am: distclean-am maintainer-clean-generic
mostlyclean: mostlyclean-recursive
mostlyclean-am: mostlyclean-generic mostlyclean-libtool
pdf: pdf-recursive
pdf-am:
ps: ps-recursive
ps-am:
uninstall-am: uninstall-info-am uninstall-local
uninstall-info: uninstall-info-recursive
.PHONY: $(RECURSIVE_TARGETS) CTAGS GTAGS all all-am all-local \
am--refresh check check-am clean clean-generic clean-libtool \
clean-local clean-recursive ctags ctags-recursive dist \
dist-all dist-bzip2 dist-gzip dist-shar dist-tarZ dist-zip \
distcheck distclean distclean-generic distclean-libtool \
distclean-local distclean-recursive distclean-tags \
distcleancheck distdir distuninstallcheck dvi dvi-am html \
html-am info info-am install install-am install-data \
install-data-am install-exec install-exec-am \
install-exec-local install-info install-info-am install-man \
install-strip installcheck installcheck-am installdirs \
installdirs-am maintainer-clean maintainer-clean-generic \
maintainer-clean-recursive mostlyclean mostlyclean-generic \
mostlyclean-libtool mostlyclean-recursive pdf pdf-am ps ps-am \
tags tags-recursive uninstall uninstall-am uninstall-info-am \
uninstall-local
# We used to have a depend target, but we now use the Automake 1.5
# dependency system. Since some people (Brian) aren't used to this,
# print out a reminder message
depend:
@ echo "Dependency analysis now done automagically by"
@ echo "GNU Automake. No need to run 'make depend'"
# For building all the examples
lamexamples: $(romio_examples_target)
@ (cd examples; $(MAKE) all)
@ $(MAKE) examples-done
# Supplement various targets so that we can build ROMIO as well. Note
# that we only build and install ROMIO if ROMIO was selected in
# configure, but we *always* [try to] clean, distclean, and uninstall
# ROMIO. This counts for the corner case where a user could do:
#
# ./configure --with-romio
# make all install
# ./configure --without-romio
# make uninstall distclean
#
# If we didn't always traverse into the romio/ directory for uninstall
# and clean, ROMIO will still be left installed, which would not be
# social for us to do. This scenario doesn't account for all cases
# (mainly because ROMIO still has its own configure script) but it
# does handle the majority of cases. For example, the following
# scenario won't be handled correctly:
#
# ./configure --with-romio
# make all install
# make distclean
# ./configure --without-romio
# make uninstall
#
# ROMIO will still left installed after this becuase ROMIO's
# ./configure won't have been triggered again, and therefore there
# will be no Makefile (et al.) in the romio/ directory to travese and
# do the uninstall.
#
# Someday, when ROMIO is fully integrated into LAM, this won't be an
# issue.
# Need to have a separate $(MAKE) invocation for the "all-done" target
# so that make won't perform the "all-done" target before the
# $(romio_all_target). This is the only way to force/guarantee the
# ordering.
all-local: $(romio_all_target)
@ $(MAKE) all-done
install-exec-local: $(romio_install_target)
# The presence of the .lam_built file triggers whether the all-done
# target generates the "LAM has been built..." message.
clean-local: romio-clean
@ rm -f .lam_built
distclean-local: romio-distclean
uninstall-local: romio-uninstall
# Be sure to set LAMHOME properly so that hcc/hcp/hf77 use the right
# libraries/include files (to avoid conflicts if the user may already
# have a LAM installed, and already have LAMHOME set somewhere else).
# Another bug in ROMIO -- we have to go set the unix permissions on
# directories under $LAMHOME/include to be 755 again. ROMIO does a
# chmod 644 $LAMHOME/include/* -- ick! The ROMIO authors have been
# notified of this. 13 June 1999/JMS.
# Automakeizm -- check to see if we already built ROMIO. "make
# install" implicitly invokes "make all" first (in a roundabout way).
romio-all:
@ echo "Making all in romio"
@ (if test ! -f romio/.lam_built; then cd romio; $(MAKE) && touch .lam_built; fi)
romio-install:
@ echo "Making install in romio"
@ if test ! -f romio/.lam_built ; then \
$(MAKE) romio-all && $(MAKE) romio-install-redirect ; \
else \
$(MAKE) romio-install-redirect; \
fi
romio-install-redirect:
@ (if test -d romio; then \
cd romio ; \
if test -f Makefile; then \
( $(MAKE) install PREFIX=$(DESTDIR)$(prefix) \
DATADIR=$(DESTDIR)$(datadir) \
LIBDIR=$(DESTDIR)$(libdir) \
INCLUDEDIR=$(DESTDIR)$(includedir) \
MANDIR=$(DESTDIR)$(mandir); ) \
fi ; \
fi)
romio-examples:
@ echo "Making lamexamples in romio"
@ (if test -d romio; then \
cd romio; \
if test -f Makefile; then \
if test -f .lam_built ; then \
( cd test; \
$(MAKE) CC=mpicc F77=mpif77 LIBS= USER_CFLAGS="$(CFLAGS)" USER_FFLAGS="$(FFLAGS) $(ROMIO_FLAGS)" ) ; \
else \
echo "*** Error: it does not appear that ROMIO has been built yet." ; \
echo "*** I cannot tell if LAM was built yet or not, so I will abort." ; \
echo "*** Please build ROMIO the normal LAM build interface" ; \
echo "*** and then attempt to build the ROMIO again." ; \
fi; \
fi; \
fi )
romio-clean:
@ echo "Making clean in romio"
@ (if test -d romio; then \
cd romio; \
rm -f .lam_built; \
if test -f Makefile ; then \
$(MAKE) clean; \
fi; \
fi )
romio-distclean:
@ echo "Making distclean in romio"
@ (if test -d romio; then \
cd romio; \
rm -f .lam_built config.command; \
if test -f Makefile ; \
then $(MAKE) cleanall; \
fi ; \
fi)
romio-uninstall:
@ echo "Making uninstall in romio"
@ if test -f romio/.lam_built ; then \
$(MAKE) romio-uninstall-redirect; \
fi
# This is just so ugly; it's painful.
romio-uninstall-redirect:
@ ( cd romio; $(MAKE) uninstall PREFIX=$(DESTDIR)$(prefix) \
DATADIR=$(DESTDIR)$(datadir) \
LIBDIR=$(DESTDIR)$(libdir) \
INCLUDEDIR=$(DESTDIR)$(includedir) \
MANDIR=$(DESTDIR)$(mandir); )
if test -f $(DESTDIR)$(libdir)/liblammpio.a; then \
rm -f $(DESTDIR)$(libdir)/liblammpio.a; \
fi
#
# For printing friendly messages at the end :-)
#
examples-done:
@echo
@echo "==========================================================================="
@echo
@echo "The examples for LAM/MPI $(LAM_VERSION) have been built."
@echo
@echo "Look in the subdirectories of examples/ for each of"
@echo "the example programs. Each subdirectory has a README file"
@echo "that explains how to run it, etc."
@echo
@echo "==========================================================================="
all-done: .lam_built
.lam_built:
@ echo
@ echo "==========================================================================="
@ echo
@ echo "LAM/MPI $(LAM_VERSION) has been built."
@ echo
@ echo "You now need to install it with \"make install\""
@ echo
@ echo "==========================================================================="
@ touch .lam_built
install-exec-hook:
@echo
@echo "==========================================================================="
@echo
@echo "Installation of LAM/MPI $(LAM_VERSION) is complete."
@echo
@echo "Be sure to visit the LAM/MPI web page: http://www.lam-mpi.org/"
@echo
@echo "The FAQ and LAM mailing list archives (both accessable from the web page)"
@echo "contain much information about getting started with LAM/MPI, as well as"
@echo "solutions to common problems."
@echo
@echo "==========================================================================="
@echo
#
# For making the distribution. LAM maintainers only. It won't work
# for you. :-)
#
# Requires the "sowing" package from ftp://ftp.mcs.anl.gov/ to make
# the man pages.
#
dist-hook:
csh -f config/distscript.csh $(DESTDIR)$(distdir)
# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:
|
