Hello,
I have just downloaded and configured LAM/MPI, and all seemed to go well
for the configure, make, amd make install, there were no errors with any
of them. However I am using MPI to run an atmospheric model and when I
attempted to configure the model and to link the MPI library using
pgf90, I got the following error messages (for a lot more files than
I've pasted below):
-----------------------------------------------------------
: undefined reference to `lam_mkpt'
/home/ccm33/MPI/lib/libmpi.a(ssi_coll_lam_basic_scan.o)(.text+0x31): In
function `lam_ssi_coll_lam_basic_scan':
: undefined reference to `lam_mkcoll'
/home/ccm33/MPI/lib/libmpi.a(ssi_coll_lam_basic_scan.o)(.text+0x172): In
function `lam_ssi_coll_lam_basic_scan':
: undefined reference to `lam_mkpt'
/home/ccm33/MPI/lib/libmpi.a(ssi_coll_lam_basic_scan.o)(.text+0x17f): In
function `lam_ssi_coll_lam_basic_scan':
: undefined reference to `lam_mkpt'
/home/ccm33/MPI/lib/libmpi.a(ssi_coll_lam_basic_scatter.o)(.text+0x56):
In function `lam_ssi_coll_lam_basic_scatter':
: undefined reference to `lam_mkcoll'
/home/ccm33/MPI/lib/libmpi.a(ssi_coll_lam_basic_scatter.o)(.text+0x87):
In function `lam_ssi_coll_lam_basic_scatter':
: undefined reference to `lam_mkpt'
/home/ccm33/MPI/lib/libmpi.a(ssi_coll_lam_basic_scatter.o)(.text+0x10a):
In function `lam_ssi_coll_lam_basic_scatter':
: undefined reference to `lam_mkpt'
/home/ccm33/MPI/lib/libmpi.a(ssi_coll_lam_basic_scatterv.o)(.text+0x4f):
In function `lam_ssi_coll_lam_basic_scatterv':
: undefined reference to `lam_mkcoll'
/home/ccm33/MPI/lib/libmpi.a(ssi_coll_lam_basic_scatterv.o)(.text+0x7c):
In function `lam_ssi_coll_lam_basic_scatterv':
: undefined reference to `lam_mkpt'
/home/ccm33/MPI/lib/libmpi.a(ssi_coll_lam_basic_scatterv.o)(.text+0xf9):
In function `lam_ssi_coll_lam_basic_scatterv':
: undefined reference to `lam_mkpt'
/home/ccm33/MPI/lib/libmpi.a(ssi_rpi_check_priority.o)(.text+0x80): In
function `lam_ssi_rpi_base_check_priority':
: undefined reference to `lam_debug'
/home/ccm33/MPI/lib/libmpi.a(ssi_rpi_fault.o)(.text+0x93): In function
`lam_ssi_rpi_commfault':
: undefined reference to `al_next'
/home/ccm33/MPI/lib/libmpi.a(ssi_rpi_crtcp_bookmarks_alltoall.o)(.text+0x7d):
In function `lam_ssi_rpi_crtcp_bookmark_exchange_alltoall':
: undefined reference to `lam_debug'
/home/ccm33/MPI/lib/libmpi.a(ssi_rpi_crtcp_bookmarks_alltoall.o)(.text+0xfd):
In function `lam_ssi_rpi_crtcp_bookmark_exchange_alltoall':
: undefined reference to `lam_debug'
/home/ccm33/MPI/lib/libmpi.a(ssi_rpi_crtcp_bookmarks_alltoall.o)(.text+0x167):
In function `send_bookmarks_alltoall':
: undefined reference to `lam_debug'
/home/ccm33/MPI/lib/libmpi.a(ssi_rpi_crtcp_bookmarks_alltoall.o)(.text+0x1ae):
In function `send_bookmarks_alltoall':
: undefined reference to `nsend'
/home/ccm33/MPI/lib/libmpi.a(ssi_rpi_crtcp_bookmarks_alltoall.o)(.text+0x1d6):
In function `send_bookmarks_alltoall':
: undefined reference to `lam_debug'
/home/ccm33/MPI/lib/libmpi.a(ssi_rpi_crtcp_bookmarks_alltoall.o)(.text+0x1f2):
In function `receive_bookmarks_alltoall':
: undefined reference to `lam_getpid'
/home/ccm33/MPI/lib/libmpi.a(ssi_rpi_crtcp_bookmarks_alltoall.o)(.text+0x220):
In function `receive_bookmarks_alltoall':
: undefined reference to `nrecv'
/home/ccm33/MPI/lib/libmpi.a(ssi_rpi_crtcp_bookmarks_alltoall.o)(.text+0x243):
In function `receive_bookmarks_alltoall':
: undefined reference to `lam_debug'
/home/ccm33/MPI/lib/libmpi.a(ssi_rpi_crtcp_bookmarks_alltoall.o)(.text+0x26b):
In function `receive_bookmarks_alltoall':
: undefined reference to `lam_debug'
/home/ccm33/MPI/lib/libmpi.a(pallgather.o)(.text+0x8a): In function
`PMPI_Allgather':
: undefined reference to `_kio'
/home/ccm33/MPI/lib/libmpi.a(pallgather.o)(.text+0xde): In function
`PMPI_Allgather':
: undefined reference to `_kio'
/home/ccm33/MPI/lib/libmpi.a(pbarrier.o)(.text+0x5b): In function
`PMPI_Barrier':
: undefined reference to `_kio'
/home/ccm33/MPI/lib/libmpi.a(pbarrier.o)(.text+0xb5): In function
`PMPI_Barrier':
: undefined reference to `_kio'
/home/ccm33/MPI/lib/libmpi.a(pbcast.o)(.text+0xae): In function
`PMPI_Bcast':
: undefined reference to `_kio'
/home/ccm33/MPI/lib/libmpi.a(pbcast.o)(.text+0x103): more undefined
references to `_kio' follow
/home/ccm33/MPI/lib/libmpi.a(pcsetname.o)(.text+0x6c): In function
`PMPI_Comm_set_name':
: undefined reference to `lam_strncpy'
/home/ccm33/MPI/lib/libmpi.a(pcsetname.o)(.text+0x78): In function
`PMPI_Comm_set_name':
: undefined reference to `_kio'
/home/ccm33/MPI/lib/libmpi.a(pcsplit.o)(.text+0x65): In function
`PMPI_Comm_split':
: undefined reference to `_kio'
/home/ccm33/MPI/lib/libmpi.a(pcsplit.o)(.text+0xb2): In function
`PMPI_Comm_split':
: undefined reference to `_kio'
/home/ccm33/MPI/lib/libmpi.a(pcsplit.o)(.text+0x134): In function
`PMPI_Comm_split':
: undefined reference to `_kio'
/home/ccm33/MPI/lib/libmpi.a(pcsplit.o)(.text+0x18a): In function
`PMPI_Comm_split':
: undefined reference to `_kio'
/home/ccm33/MPI/lib/libmpi.a(pcsplit.o)(.text+0x2b6): In function
`PMPI_Comm_split':
: undefined reference to `al_insert'
/home/ccm33/MPI/lib/libmpi.a(pcsplit.o)(.text+0x31e): In function
`PMPI_Comm_split':
: undefined reference to `_kio'
/home/ccm33/MPI/lib/libmpi.a(pgather.o)(.text+0xc8): In function
`PMPI_Gather':
: undefined reference to `_kio'
/home/ccm33/MPI/lib/libmpi.a(pgather.o)(.text+0x11c): In function
`PMPI_Gather':: undefined reference to `_kio'
/home/ccm33/MPI/lib/libmpi.a(pgatherv.o)(.text+0xdf): In function
`PMPI_Gatherv':
: undefined reference to `_kio'
/home/ccm33/MPI/lib/libmpi.a(pgatherv.o)(.text+0x139): In function
`PMPI_Gatherv':
: undefined reference to `_kio'
/home/ccm33/MPI/lib/libmpi.a(pirecv.o)(.text+0x52): more undefined
references to `_kio' follow
gmake: *** [test_mpi] Error 2
----------------------------------------------------------
I am pretty sure that this is some underscore/double underscore
misunderstanding, however I am not sure how to fix it. I am using
pgf90, pgf77, mpicc-mpich and mpiCC-mpich compilers on an intel linux
cluster, and I built the MPI library using pgf90.
Thanks,
Cathy
--
Cathryn Meyer
Department of Geology and Geophysics
Yale University
cathryn.meyer_at_[hidden]
(203)432-1959
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